Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:25965594..25967827-chr7:25979704..25981688,2	K562	blood:
2	chr7:25965773..25968588-chr7:25989969..25992378,2	MCF-7	breast:
3	chr7:25953157..25955239-chr7:25965807..25967682,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10258485	0.90[EUR][1000 genomes]
rs10951118	0.92[EUR][1000 genomes]
rs10951119	0.91[EUR][1000 genomes]
rs10951120	0.91[EUR][1000 genomes]
rs10951121	0.91[EUR][1000 genomes]
rs11983649	0.88[EUR][1000 genomes]
rs13231897	0.87[EUR][1000 genomes]
rs1966841	0.91[EUR][1000 genomes]
rs2391172	0.92[EUR][1000 genomes]
rs2391175	0.96[GIH][hapmap]
rs2893222	0.89[EUR][1000 genomes]
rs4236321	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4412274	0.91[EUR][1000 genomes]
rs4422683	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4640955	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4722543	0.91[EUR][1000 genomes]
rs4722545	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4722546	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4722547	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4722548	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4722550	0.90[EUR][1000 genomes]
rs6461896	0.91[EUR][1000 genomes]
rs6954557	0.89[EUR][1000 genomes]
rs6977848	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7803374	0.89[EUR][1000 genomes]
rs7810017	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs997988	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs998357	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25965400-25967400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:25965800-25966200	Enhancers	K562	blood
3	chr7:25965800-25966600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:25965800-25966800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:25965800-25966800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:25965800-25967200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:25965800-25967200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:25965800-25967200	Enhancers	NHEK	skin
9	chr7:25965800-25967400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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