Variant report

Variant	rs6952078
Chromosome Location	chr7:12287918-12287919
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12254720..12256765-chr7:12287281..12288945,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10215270	0.88[JPT][hapmap]
rs10228123	1.00[JPT][hapmap]
rs10231277	0.82[ASN][1000 genomes]
rs10231484	0.82[ASN][1000 genomes]
rs10231577	0.81[ASN][1000 genomes]
rs10236246	0.81[ASN][1000 genomes]
rs10237559	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10253377	0.93[ASN][1000 genomes]
rs10256397	0.88[JPT][hapmap]
rs10259305	0.88[JPT][hapmap]
rs10260491	0.82[ASN][1000 genomes]
rs10262667	0.88[JPT][hapmap]
rs10263810	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10268302	0.88[JPT][hapmap]
rs1079506	0.88[JPT][hapmap]
rs11977828	0.96[ASN][1000 genomes]
rs12699321	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12699322	0.85[CEU][hapmap]
rs12699342	0.98[ASN][1000 genomes]
rs12699350	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13240394	0.82[EUR][1000 genomes]
rs13244354	1.00[CEU][hapmap];0.82[GIH][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs1435530	0.82[EUR][1000 genomes]
rs17165694	0.82[EUR][1000 genomes]
rs28572024	0.82[ASN][1000 genomes]
rs28657943	0.82[ASN][1000 genomes]
rs2883841	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4446631	0.81[ASN][1000 genomes]
rs4446632	0.81[ASN][1000 genomes]
rs4496864	0.81[ASN][1000 genomes]
rs4574747	0.81[ASN][1000 genomes]
rs57694022	0.82[ASN][1000 genomes]
rs61054154	0.82[ASN][1000 genomes]
rs66601708	0.82[ASN][1000 genomes]
rs67593601	0.82[ASN][1000 genomes]
rs6945381	0.94[ASN][1000 genomes]
rs6946459	0.81[GIH][hapmap]
rs6948515	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6949562	0.93[ASN][1000 genomes]
rs6969447	0.92[ASN][1000 genomes]
rs6972805	1.00[JPT][hapmap]
rs6976341	0.93[ASN][1000 genomes]
rs72584561	0.82[ASN][1000 genomes]
rs72584562	0.82[ASN][1000 genomes]
rs72584563	0.81[ASN][1000 genomes]
rs72584564	0.82[ASN][1000 genomes]
rs72584567	0.82[ASN][1000 genomes]
rs72584570	0.82[ASN][1000 genomes]
rs72584572	0.82[ASN][1000 genomes]
rs72584573	0.82[ASN][1000 genomes]
rs72584575	0.82[ASN][1000 genomes]
rs72584577	0.82[ASN][1000 genomes]
rs7776877	0.93[ASN][1000 genomes]
rs7780582	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788409	0.86[ASN][1000 genomes]
rs7795892	0.93[ASN][1000 genomes]
rs7800823	0.88[JPT][hapmap]
rs7808979	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9768750	0.89[ASN][1000 genomes]
rs9768757	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12271800-12289000	Weak transcription	HSMM	muscle
2	chr7:12280000-12295000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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