Variant report

Variant	rs6945381
Chromosome Location	chr7:12299282-12299283
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12297657..12300131-chr7:12305646..12308026,2	K562	blood:

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10215270	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs10225682	0.84[EUR][1000 genomes]
rs10228123	1.00[JPT][hapmap]
rs10230889	0.89[EUR][1000 genomes]
rs10231277	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10231484	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10231577	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10236246	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10237559	0.86[ASN][1000 genomes]
rs10237810	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10239248	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10247702	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10248101	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10251962	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10253377	0.99[ASN][1000 genomes]
rs10256397	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs10258758	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10258988	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10259305	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs10259332	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10260491	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10262667	0.88[JPT][hapmap]
rs10262994	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10263810	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10264702	0.84[EUR][1000 genomes]
rs10268302	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs10270435	1.00[CEU][hapmap]
rs10271597	1.00[CEU][hapmap]
rs10272812	0.89[EUR][1000 genomes]
rs10273416	1.00[CEU][hapmap]
rs10273672	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10273729	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10274502	1.00[EUR][1000 genomes]
rs10275284	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10275416	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1030032	0.95[EUR][1000 genomes]
rs1079506	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs1117386	0.84[EUR][1000 genomes]
rs11971213	0.90[EUR][1000 genomes]
rs11971413	0.84[EUR][1000 genomes]
rs11971590	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11973540	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11977828	0.95[ASN][1000 genomes]
rs12699342	0.94[ASN][1000 genomes]
rs12699350	0.99[ASN][1000 genomes]
rs13437654	0.84[EUR][1000 genomes]
rs17165803	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2017812	0.95[EUR][1000 genomes]
rs2160268	1.00[CEU][hapmap]
rs2192840	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2216048	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28451976	0.83[ASN][1000 genomes]
rs28564922	0.86[EUR][1000 genomes]
rs28572024	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28608715	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28657943	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28722991	0.95[EUR][1000 genomes]
rs2883841	0.89[ASN][1000 genomes]
rs2883877	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35472397	0.86[EUR][1000 genomes]
rs35912436	0.86[EUR][1000 genomes]
rs3899335	0.84[EUR][1000 genomes]
rs3919542	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3919543	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4141568	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4141569	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4446631	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4446632	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4496864	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4574747	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57694022	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59043486	0.95[EUR][1000 genomes]
rs60044930	0.95[EUR][1000 genomes]
rs61054154	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6460920	0.84[EUR][1000 genomes]
rs66601708	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67593601	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68050309	0.90[EUR][1000 genomes]
rs6944872	0.84[EUR][1000 genomes]
rs6946459	1.00[CEU][hapmap]
rs6946838	0.90[EUR][1000 genomes]
rs6948209	0.84[EUR][1000 genomes]
rs6948226	0.90[EUR][1000 genomes]
rs6948515	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6949562	0.99[ASN][1000 genomes]
rs6949574	0.89[EUR][1000 genomes]
rs6952078	0.94[ASN][1000 genomes]
rs6959666	1.00[EUR][1000 genomes]
rs6963376	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6969447	0.98[ASN][1000 genomes]
rs6972805	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6976341	0.99[ASN][1000 genomes]
rs6977521	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6977815	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6977943	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72584556	0.89[EUR][1000 genomes]
rs72584561	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584562	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584563	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72584564	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584567	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584570	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584572	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584573	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584574	1.00[EUR][1000 genomes]
rs72584575	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584577	0.85[ASN][1000 genomes]
rs72584589	0.84[EUR][1000 genomes]
rs72584593	0.90[EUR][1000 genomes]
rs72586705	0.84[EUR][1000 genomes]
rs72586714	0.84[EUR][1000 genomes]
rs72586741	0.84[EUR][1000 genomes]
rs7776877	0.99[ASN][1000 genomes]
rs7780582	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7788409	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795892	0.99[ASN][1000 genomes]
rs7800111	0.90[EUR][1000 genomes]
rs7800823	0.88[JPT][hapmap]
rs7804012	0.86[EUR][1000 genomes]
rs7808979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs918018	0.86[EUR][1000 genomes]
rs954660	1.00[CEU][hapmap]
rs9768750	0.85[ASN][1000 genomes]
rs9768757	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12297800-12299800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr7:12298200-12300400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr7:12298800-12299400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:12299000-12301600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:12299200-12299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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