Variant report

Variant	rs72584556
Chromosome Location	chr7:12309303-12309304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12304154..12306342-chr7:12308310..12310160,2	K562	blood:
2	chr7:12249722..12251364-chr7:12307905..12310601,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106460	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10215270	0.83[EUR][1000 genomes]
rs10225682	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10227871	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10230889	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10231277	0.85[EUR][1000 genomes]
rs10231484	0.89[EUR][1000 genomes]
rs10231577	0.89[EUR][1000 genomes]
rs10237810	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10239248	0.89[EUR][1000 genomes]
rs10247702	0.89[EUR][1000 genomes]
rs10248101	0.89[EUR][1000 genomes]
rs10251962	0.83[EUR][1000 genomes]
rs10256397	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10258758	0.89[EUR][1000 genomes]
rs10258988	0.89[EUR][1000 genomes]
rs10259305	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10259332	0.85[EUR][1000 genomes]
rs10260491	0.89[EUR][1000 genomes]
rs10262994	0.89[EUR][1000 genomes]
rs10264702	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10268302	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10268480	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10272812	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10273672	0.89[EUR][1000 genomes]
rs10273729	0.89[EUR][1000 genomes]
rs10274502	0.89[EUR][1000 genomes]
rs10275284	0.89[EUR][1000 genomes]
rs10275416	0.89[EUR][1000 genomes]
rs1030032	0.85[EUR][1000 genomes]
rs1079506	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1117386	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11971213	0.81[EUR][1000 genomes]
rs11971413	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11971590	0.83[EUR][1000 genomes]
rs11973540	0.89[EUR][1000 genomes]
rs11980307	0.84[ASN][1000 genomes]
rs13437654	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17165803	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2017812	0.85[EUR][1000 genomes]
rs2192840	0.89[EUR][1000 genomes]
rs2216048	0.89[EUR][1000 genomes]
rs2287067	0.83[ASN][1000 genomes]
rs28572024	0.89[EUR][1000 genomes]
rs28608715	0.89[EUR][1000 genomes]
rs28657943	0.89[EUR][1000 genomes]
rs28722991	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2883877	0.85[EUR][1000 genomes]
rs35612403	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3899335	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3919542	0.89[EUR][1000 genomes]
rs3919543	0.89[EUR][1000 genomes]
rs4141568	0.89[EUR][1000 genomes]
rs4141569	0.89[EUR][1000 genomes]
rs4446631	0.85[EUR][1000 genomes]
rs4446632	0.89[EUR][1000 genomes]
rs4496864	0.89[EUR][1000 genomes]
rs4574747	0.89[EUR][1000 genomes]
rs57694022	0.85[EUR][1000 genomes]
rs59043486	0.85[EUR][1000 genomes]
rs60044930	0.85[EUR][1000 genomes]
rs61054154	0.89[EUR][1000 genomes]
rs6460920	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66601708	0.85[EUR][1000 genomes]
rs67593601	0.85[EUR][1000 genomes]
rs68050309	0.81[EUR][1000 genomes]
rs6944872	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6945381	0.89[EUR][1000 genomes]
rs6946838	0.81[EUR][1000 genomes]
rs6948209	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6948226	0.81[EUR][1000 genomes]
rs6948366	0.83[ASN][1000 genomes]
rs6949574	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959666	0.89[EUR][1000 genomes]
rs6963376	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6967342	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6971849	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6977521	0.85[EUR][1000 genomes]
rs6977815	0.89[EUR][1000 genomes]
rs6977943	0.89[EUR][1000 genomes]
rs72584561	0.85[EUR][1000 genomes]
rs72584562	0.89[EUR][1000 genomes]
rs72584563	0.89[EUR][1000 genomes]
rs72584564	0.89[EUR][1000 genomes]
rs72584567	0.89[EUR][1000 genomes]
rs72584570	0.89[EUR][1000 genomes]
rs72584572	0.89[EUR][1000 genomes]
rs72584573	0.89[EUR][1000 genomes]
rs72584574	0.89[EUR][1000 genomes]
rs72584575	0.89[EUR][1000 genomes]
rs72584589	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72584593	0.81[EUR][1000 genomes]
rs72586705	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72586714	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72586729	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72586741	0.83[EUR][1000 genomes]
rs7788409	0.81[EUR][1000 genomes]
rs7800111	0.81[EUR][1000 genomes]
rs7800823	0.83[ASN][1000 genomes]
rs9768757	0.89[EUR][1000 genomes]
rs984568	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12308400-12310600	Enhancers	Fetal Intestine Large	intestine
2	chr7:12308600-12310000	Enhancers	Fetal Intestine Small	intestine
3	chr7:12308800-12309600	Enhancers	Liver	Liver
4	chr7:12308800-12310000	Enhancers	HepG2	liver
5	chr7:12309200-12309400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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