Variant report

Variant	rs6967342
Chromosome Location	chr7:12352210-12352211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12351255..12355072-chr7:12355211..12359779,5	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10215270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10225682	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227871	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228123	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10230889	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10231277	0.81[EUR][1000 genomes]
rs10236246	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10251962	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[TSI][hapmap]
rs10256397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10259332	0.90[EUR][1000 genomes]
rs10262667	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10264702	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10268480	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270435	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs10271597	1.00[CEU][hapmap]
rs10272812	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10273416	1.00[CEU][hapmap]
rs1030032	0.81[EUR][1000 genomes]
rs1079506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1117386	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971213	0.86[EUR][1000 genomes]
rs11971413	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971590	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs11980307	1.00[ASN][1000 genomes]
rs13437654	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017812	0.81[EUR][1000 genomes]
rs2160268	1.00[CEU][hapmap]
rs2287067	0.99[ASN][1000 genomes]
rs28451976	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28564922	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2883877	0.81[EUR][1000 genomes]
rs35472397	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35612403	0.96[ASN][1000 genomes]
rs35912436	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3899335	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59043486	0.81[EUR][1000 genomes]
rs60044930	0.81[EUR][1000 genomes]
rs6460920	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66601708	0.81[EUR][1000 genomes]
rs67593601	0.81[EUR][1000 genomes]
rs68050309	0.86[EUR][1000 genomes]
rs6944872	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946459	1.00[CEU][hapmap]
rs6946838	0.86[EUR][1000 genomes]
rs6948209	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6948226	0.86[EUR][1000 genomes]
rs6948366	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6948515	0.88[JPT][hapmap]
rs6949574	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6971849	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972805	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs72584556	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72584561	0.81[EUR][1000 genomes]
rs72584589	0.93[ASN][1000 genomes]
rs72584593	0.86[EUR][1000 genomes]
rs72586705	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72586714	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72586729	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7800111	0.86[EUR][1000 genomes]
rs7800823	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7804012	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7808979	0.88[JPT][hapmap]
rs918018	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs954660	1.00[CEU][hapmap]
rs984568	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034059	chr7:12342549-12367818	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1029941	chr7:12351595-12444490	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv433030	chr7:12352210-12443042	Enhancers Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1034475	chr7:12352210-12444490	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6967342	TNFAIP6	trans	brain	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12338400-12359200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:12339600-12360000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:12350600-12353400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:12351000-12367600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:12352200-12360600	Weak transcription	K562	blood

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