Variant report

Variant	rs1030032
Chromosome Location	chr7:12337462-12337463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10215270	0.90[EUR][1000 genomes]
rs10225682	0.90[EUR][1000 genomes]
rs10227871	0.81[EUR][1000 genomes]
rs10230889	0.85[EUR][1000 genomes]
rs10231277	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10231484	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10231577	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10233442	0.92[ASN][1000 genomes]
rs10236246	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10237810	0.81[EUR][1000 genomes]
rs10239248	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10247702	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10248101	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10258758	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10258988	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10259305	0.85[EUR][1000 genomes]
rs10259332	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10260491	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10262994	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10264702	0.90[EUR][1000 genomes]
rs10268480	0.81[EUR][1000 genomes]
rs10272812	0.85[EUR][1000 genomes]
rs10273672	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10273729	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10274502	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10275284	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10275416	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10277566	0.92[ASN][1000 genomes]
rs1079506	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1117386	0.90[EUR][1000 genomes]
rs11971213	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11971413	0.90[EUR][1000 genomes]
rs11973540	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13437654	0.90[EUR][1000 genomes]
rs17165803	0.90[EUR][1000 genomes]
rs2017812	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192840	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216048	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28451976	0.83[ASN][1000 genomes]
rs28564922	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28572024	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28608715	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28657943	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28722991	0.90[EUR][1000 genomes]
rs2883877	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35472397	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35912436	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3899335	0.90[EUR][1000 genomes]
rs3919542	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3919543	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4141568	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4141569	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4446631	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4446632	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4496864	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4574747	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57694022	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59043486	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60044930	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61054154	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6460920	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66601708	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67593601	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68050309	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6944872	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6945245	0.92[ASN][1000 genomes]
rs6945381	0.95[EUR][1000 genomes]
rs6946838	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948209	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6948226	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6949574	0.85[EUR][1000 genomes]
rs6959666	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6963376	0.81[EUR][1000 genomes]
rs6967342	0.81[EUR][1000 genomes]
rs6971849	0.81[EUR][1000 genomes]
rs6972805	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6977521	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6977815	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6977943	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72584556	0.85[EUR][1000 genomes]
rs72584561	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72584562	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72584563	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72584564	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72584567	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72584570	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72584572	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72584573	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72584574	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72584575	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72584577	0.89[ASN][1000 genomes]
rs72584593	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72586705	0.90[EUR][1000 genomes]
rs72586714	0.90[EUR][1000 genomes]
rs72586729	0.85[EUR][1000 genomes]
rs7788409	0.86[EUR][1000 genomes]
rs7800111	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7804012	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs918018	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9768757	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12335200-12338400	Enhancers	Placenta	Placenta
2	chr7:12336200-12338000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:12336200-12342400	Weak transcription	HMEC	breast
4	chr7:12336400-12337600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:12337000-12337600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:12337000-12337600	Enhancers	Fetal Kidney	kidney
7	chr7:12337000-12338400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:12337200-12337600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:12337200-12338000	Enhancers	NHEK	skin
10	chr7:12337400-12337800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:12337400-12338600	Enhancers	H1 Cell Line	embryonic stem cell

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