Variant report

Variant	rs10215270
Chromosome Location	chr7:12386945-12386946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12380686..12382239-chr7:12385639..12388082,2	K562	blood:
2	chr7:12380686..12382573-chr7:12386582..12389339,2	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10225682	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10227871	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10228123	1.00[JPT][hapmap]
rs10230889	0.83[EUR][1000 genomes]
rs10231484	0.84[EUR][1000 genomes]
rs10231577	0.84[EUR][1000 genomes]
rs10236246	0.81[EUR][1000 genomes]
rs10239248	0.84[EUR][1000 genomes]
rs10247702	0.84[EUR][1000 genomes]
rs10248101	0.84[EUR][1000 genomes]
rs10251962	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10256397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10258758	0.84[EUR][1000 genomes]
rs10258988	0.84[EUR][1000 genomes]
rs10259305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10260491	0.84[EUR][1000 genomes]
rs10262667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10262994	0.84[EUR][1000 genomes]
rs10264702	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10268012	0.81[AMR][1000 genomes]
rs10268302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10268480	0.93[ASN][1000 genomes]
rs10270435	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10271597	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10272812	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10273416	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10273672	0.84[EUR][1000 genomes]
rs10273729	0.84[EUR][1000 genomes]
rs10274502	0.84[EUR][1000 genomes]
rs10275284	0.84[EUR][1000 genomes]
rs10275416	0.84[EUR][1000 genomes]
rs1030032	0.90[EUR][1000 genomes]
rs1079506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1117386	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11971213	0.85[EUR][1000 genomes]
rs11971413	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11971590	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11973540	0.84[EUR][1000 genomes]
rs11980307	0.93[ASN][1000 genomes]
rs13437654	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17165803	0.89[EUR][1000 genomes]
rs2017812	0.90[EUR][1000 genomes]
rs2160268	1.00[CEU][hapmap]
rs2192840	0.84[EUR][1000 genomes]
rs2216048	0.84[EUR][1000 genomes]
rs2287067	0.91[ASN][1000 genomes]
rs28564922	0.81[EUR][1000 genomes]
rs28572024	0.84[EUR][1000 genomes]
rs28608715	0.84[EUR][1000 genomes]
rs28657943	0.84[EUR][1000 genomes]
rs28722991	0.89[EUR][1000 genomes]
rs35472397	0.81[EUR][1000 genomes]
rs35612403	0.88[ASN][1000 genomes]
rs35912436	0.81[EUR][1000 genomes]
rs3899335	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3919542	0.84[EUR][1000 genomes]
rs3919543	0.84[EUR][1000 genomes]
rs4141568	0.84[EUR][1000 genomes]
rs4141569	0.84[EUR][1000 genomes]
rs4446632	0.84[EUR][1000 genomes]
rs4496864	0.84[EUR][1000 genomes]
rs4574747	0.84[EUR][1000 genomes]
rs61054154	0.84[EUR][1000 genomes]
rs6460920	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68050309	0.85[EUR][1000 genomes]
rs6944872	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6945381	0.84[EUR][1000 genomes]
rs6946459	1.00[CEU][hapmap]
rs6946838	0.85[EUR][1000 genomes]
rs6948209	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6948226	0.85[EUR][1000 genomes]
rs6948366	0.91[ASN][1000 genomes]
rs6948515	0.88[JPT][hapmap]
rs6949574	0.83[EUR][1000 genomes]
rs6959666	0.84[EUR][1000 genomes]
rs6967342	0.93[ASN][1000 genomes]
rs6971849	0.93[ASN][1000 genomes]
rs6972805	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs6977815	0.84[EUR][1000 genomes]
rs6977943	0.84[EUR][1000 genomes]
rs72584556	0.83[EUR][1000 genomes]
rs72584562	0.84[EUR][1000 genomes]
rs72584563	0.84[EUR][1000 genomes]
rs72584564	0.84[EUR][1000 genomes]
rs72584567	0.84[EUR][1000 genomes]
rs72584570	0.84[EUR][1000 genomes]
rs72584572	0.84[EUR][1000 genomes]
rs72584573	0.84[EUR][1000 genomes]
rs72584574	0.84[EUR][1000 genomes]
rs72584575	0.84[EUR][1000 genomes]
rs72584589	0.85[ASN][1000 genomes]
rs72584593	0.85[EUR][1000 genomes]
rs72586705	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72586714	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72586729	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72586741	0.89[EUR][1000 genomes]
rs7800111	0.85[EUR][1000 genomes]
rs7800823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7804012	0.81[EUR][1000 genomes]
rs7808979	0.88[JPT][hapmap]
rs918018	0.81[EUR][1000 genomes]
rs954660	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9768757	0.84[EUR][1000 genomes]
rs984568	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029941	chr7:12351595-12444490	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv433030	chr7:12352210-12443042	Enhancers Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1034475	chr7:12352210-12444490	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1029098	chr7:12354108-12443042	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv887631	chr7:12360805-12434771	Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv887632	chr7:12360805-12439672	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv464371	chr7:12371801-12434771	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv606223	chr7:12371801-12434771	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv887633	chr7:12371801-12439672	Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv2763622	chr7:12375528-12424583	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv887634	chr7:12385391-12439672	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12354400-12405000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:12363800-12392800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:12368200-12433200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:12375800-12387200	Strong transcription	K562	blood
5	chr7:12377000-12408000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:12380600-12393400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:12381800-12390400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:12381800-12429000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:12382800-12390800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:12383400-12401800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:12385400-12395200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:12385600-12390800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:12385600-12418000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:12385800-12390000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:12385800-12390200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:12385800-12391400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:12386000-12390200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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