Variant report

Variant	rs6963376
Chromosome Location	chr7:12290134-12290135
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10230889	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10231277	0.81[EUR][1000 genomes]
rs10231484	0.85[EUR][1000 genomes]
rs10231577	0.85[EUR][1000 genomes]
rs10237810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239248	0.85[EUR][1000 genomes]
rs10247702	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10248101	0.85[EUR][1000 genomes]
rs10258758	0.85[EUR][1000 genomes]
rs10258988	0.85[EUR][1000 genomes]
rs10260491	0.85[EUR][1000 genomes]
rs10262994	0.85[EUR][1000 genomes]
rs10272812	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10273672	0.85[EUR][1000 genomes]
rs10273729	0.85[EUR][1000 genomes]
rs10274502	0.85[EUR][1000 genomes]
rs10275284	0.85[EUR][1000 genomes]
rs10275416	0.85[EUR][1000 genomes]
rs1030032	0.81[EUR][1000 genomes]
rs11973540	0.85[EUR][1000 genomes]
rs17165803	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2017812	0.81[EUR][1000 genomes]
rs2192840	0.85[EUR][1000 genomes]
rs2216048	0.85[EUR][1000 genomes]
rs28572024	0.85[EUR][1000 genomes]
rs28608715	0.85[EUR][1000 genomes]
rs28657943	0.85[EUR][1000 genomes]
rs28722991	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2883877	0.81[EUR][1000 genomes]
rs3919542	0.85[EUR][1000 genomes]
rs3919543	0.85[EUR][1000 genomes]
rs4141568	0.85[EUR][1000 genomes]
rs4141569	0.85[EUR][1000 genomes]
rs4446631	0.81[EUR][1000 genomes]
rs4446632	0.85[EUR][1000 genomes]
rs4496864	0.85[EUR][1000 genomes]
rs4574747	0.85[EUR][1000 genomes]
rs57694022	0.81[EUR][1000 genomes]
rs59043486	0.81[EUR][1000 genomes]
rs60044930	0.81[EUR][1000 genomes]
rs61054154	0.85[EUR][1000 genomes]
rs66601708	0.81[EUR][1000 genomes]
rs67593601	0.81[EUR][1000 genomes]
rs6945381	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6949574	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6959666	0.85[EUR][1000 genomes]
rs6977521	0.81[EUR][1000 genomes]
rs6977815	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6977943	0.85[EUR][1000 genomes]
rs72584556	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72584561	0.81[EUR][1000 genomes]
rs72584562	0.85[EUR][1000 genomes]
rs72584563	0.85[EUR][1000 genomes]
rs72584564	0.85[EUR][1000 genomes]
rs72584567	0.85[EUR][1000 genomes]
rs72584570	0.85[EUR][1000 genomes]
rs72584572	0.85[EUR][1000 genomes]
rs72584573	0.85[EUR][1000 genomes]
rs72584574	0.85[EUR][1000 genomes]
rs72584575	0.85[EUR][1000 genomes]
rs72586705	0.85[AMR][1000 genomes]
rs7788409	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9768757	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12280000-12295000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:12289600-12290200	Enhancers	HSMM	muscle

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