Variant report

Variant	rs6957586
Chromosome Location	chr7:106702633-106702634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10227616	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13243645	0.93[EUR][1000 genomes]
rs2237648	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2395833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35585362	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62483563	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6946733	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6975038	0.91[EUR][1000 genomes]
rs758943	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106686800-106707200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:106690800-106705800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:106692400-106704200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:106697600-106703400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:106697800-106706200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:106698000-106703800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:106698000-106703800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:106700200-106706600	Weak transcription	Fetal Brain Male	brain
9	chr7:106701000-106703200	Strong transcription	K562	blood
10	chr7:106701000-106710000	Weak transcription	Right Ventricle	heart
11	chr7:106701600-106716000	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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