Variant report

Variant	rs2237648
Chromosome Location	chr7:106691633-106691634
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10227616	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11766415	0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs13243645	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2395833	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35585362	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62483563	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6946733	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6957586	0.95[EUR][1000 genomes]
rs6975038	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs758943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106686800-106707200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:106687800-106697400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:106688200-106697200	Weak transcription	Brain Germinal Matrix	brain
4	chr7:106689000-106694400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:106689200-106692600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:106689400-106692200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:106689400-106692400	Weak transcription	Fetal Brain Male	brain
8	chr7:106690000-106691800	Genic enhancers	K562	blood
9	chr7:106690400-106692400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr7:106690800-106705800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:106691000-106692000	Enhancers	HUVEC	blood vessel
12	chr7:106691000-106692200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:106691200-106691800	Enhancers	Fetal Stomach	stomach
14	chr7:106691400-106692200	Weak transcription	NHLF	lung
15	chr7:106691400-106692600	Enhancers	Rectal Smooth Muscle	rectum
16	chr7:106691600-106694200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:106691600-106697200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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