Variant report

Variant	rs6957895
Chromosome Location	chr7:117928764-117928765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12216555	0.82[JPT][hapmap]
rs17141162	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17141351	0.81[JPT][hapmap]
rs17141357	0.81[JPT][hapmap]
rs17141365	0.82[JPT][hapmap]
rs3757799	0.82[JPT][hapmap]
rs3757801	0.82[JPT][hapmap]
rs3808178	0.81[JPT][hapmap]
rs4141027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4141029	0.82[JPT][hapmap]
rs4141030	0.82[JPT][hapmap]
rs62468176	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468219	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468220	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6943182	0.82[JPT][hapmap]
rs6962486	0.82[JPT][hapmap]
rs6964881	0.81[JPT][hapmap]
rs6976656	0.81[JPT][hapmap]
rs7778155	0.82[JPT][hapmap]
rs7779452	0.82[JPT][hapmap]
rs7792264	0.81[JPT][hapmap]
rs7792296	0.81[JPT][hapmap]
rs7796775	0.81[JPT][hapmap]
rs7798529	0.81[JPT][hapmap]
rs979653	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029103	chr7:117917362-118035987	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2764014	chr7:117917374-118035999	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv608261	chr7:117917719-117965390	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv518701	chr7:117921267-117928764	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv608262	chr7:117926753-118036133	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117926600-117929000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr7:117927000-117929000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr7:117927200-117929000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr7:117927400-117928800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:117927400-117929000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:117927400-117931400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr7:117927600-117929000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr7:117927800-117929000	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:117928400-117929000	Bivalent Enhancer	Primary T cells from cord blood	blood
10	chr7:117928400-117929200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:117928600-117928800	Bivalent Enhancer	Primary B cells from cord blood	blood
12	chr7:117928600-117929000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:117928600-117929000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
14	chr7:117928600-117930200	Enhancers	Dnd41	blood

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