Variant report

Variant	rs17141162
Chromosome Location	chr7:117903588-117903589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12216555	0.82[JPT][hapmap]
rs12540880	1.00[CEU][hapmap]
rs17141135	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141351	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs17141357	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs17141365	0.82[JPT][hapmap]
rs3757799	0.82[JPT][hapmap]
rs3757801	0.82[JPT][hapmap]
rs3808178	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs4141027	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4141029	0.82[JPT][hapmap]
rs4141030	0.82[JPT][hapmap]
rs4727861	0.82[ASN][1000 genomes]
rs62468162	0.90[ASN][1000 genomes]
rs62468163	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62468176	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62468178	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62468213	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62468219	0.83[AMR][1000 genomes]
rs62468220	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6943182	0.82[JPT][hapmap]
rs6957895	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6962486	0.82[JPT][hapmap]
rs6964881	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs6976656	0.81[JPT][hapmap]
rs6979426	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7778155	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7779452	0.82[JPT][hapmap]
rs7792264	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs7792296	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs7796775	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs7798529	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs979653	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv889089	chr7:117865940-117921267	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv966730	chr7:117901893-117906091	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117901200-117904200	Weak transcription	Dnd41	blood

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