Variant report

Variant	rs17141135
Chromosome Location	chr7:117885514-117885515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117874784..117876753-chr7:117884123..117886135,2	K562	blood:
2	chr7:117884617..117887581-chr7:117888612..117890526,2	MCF-7	breast:
3	chr7:117884069..117886965-chr7:117888003..117890494,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10228816	0.86[EUR][1000 genomes]
rs10254348	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10258010	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10269710	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12216555	0.81[JPT][hapmap]
rs12540880	1.00[CEU][hapmap]
rs17141162	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2058415	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3757799	0.81[JPT][hapmap]
rs3757801	0.81[JPT][hapmap]
rs3808175	0.92[GIH][hapmap]
rs3808178	0.92[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs4141027	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4141029	0.81[JPT][hapmap]
rs4141030	0.81[JPT][hapmap]
rs4727861	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4730826	0.85[EUR][1000 genomes]
rs62468162	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943182	0.81[JPT][hapmap]
rs6962486	0.81[JPT][hapmap]
rs6964881	0.92[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs6976656	0.81[JPT][hapmap]
rs6979426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7778155	0.81[JPT][hapmap]
rs7779452	0.81[JPT][hapmap]
rs7792264	0.92[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs7792296	0.92[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs7796775	0.92[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs7798529	0.92[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs7805538	0.92[GIH][hapmap];0.81[TSI][hapmap]
rs7809742	0.92[GIH][hapmap];0.81[TSI][hapmap]
rs7811055	0.92[GIH][hapmap];0.81[TSI][hapmap]
rs979653	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv889089	chr7:117865940-117921267	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117884800-117886400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:117885000-117885600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:117885000-117885600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:117885000-117886200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:117885000-117886200	Enhancers	Dnd41	blood
6	chr7:117885200-117885600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:117885200-117885600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:117885200-117885600	Enhancers	NH-A	brain
9	chr7:117885200-117885800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:117885200-117885800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:117885200-117885800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:117885200-117886000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:117885200-117886000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links