Variant report

Variant	rs6958977
Chromosome Location	chr7:100001978-100001979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99964487..99968212-chr7:99999516..100003937,5	K562	blood:
2	chr7:99998688..100005691-chr7:100025198..100032529,13	K562	blood:
3	chr7:99999981..100004056-chr7:100025955..100028097,3	MCF-7	breast:
4	chr7:100001865..100004155-chr7:100004575..100006403,2	K562	blood:
5	chr7:100001600..100003590-chr7:100030106..100032583,2	MCF-7	breast:
6	chr7:99964978..99968212-chr7:99999516..100003937,4	K562	blood:
7	chr7:100000444..100003113-chr7:100025108..100027537,3	K562	blood:

Variant related genes	Relation type
ENSG00000078487	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000085514	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10246363	1.00[YRI][hapmap]
rs10256481	1.00[AMR][1000 genomes]
rs57310628	1.00[AMR][1000 genomes]
rs58497263	1.00[AMR][1000 genomes]
rs59251177	1.00[AMR][1000 genomes]
rs59338670	1.00[AFR][1000 genomes]
rs61246011	1.00[AMR][1000 genomes]
rs61611428	1.00[AMR][1000 genomes]
rs68049253	1.00[AMR][1000 genomes]
rs6952735	1.00[ASW][hapmap];0.95[LWK][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap]
rs6968343	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6970350	0.89[ASW][hapmap];0.88[MKK][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399601	1.00[AMR][1000 genomes]
rs73401410	1.00[AMR][1000 genomes]
rs73401448	1.00[AMR][1000 genomes]
rs73401452	1.00[AMR][1000 genomes]
rs73401466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401478	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403324	1.00[AMR][1000 genomes]
rs7796885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6958977	PVRIG	cis	lymphoblastoid	seeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99940800-100014600	Weak transcription	Right Atrium	heart
2	chr7:99962400-100020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:99987800-100025400	Weak transcription	Right Ventricle	heart
4	chr7:99995000-100025400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:99995000-100026000	Weak transcription	Primary T cells from cord blood	blood
6	chr7:99995200-100005000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:99995600-100004400	Weak transcription	GM12878-XiMat	blood
8	chr7:99995600-100004800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr7:99995800-100005200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:99995800-100005200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:99996000-100006800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:99996200-100007200	Weak transcription	Spleen	Spleen
13	chr7:99996200-100013800	Weak transcription	Fetal Stomach	stomach
14	chr7:99996200-100025400	Weak transcription	Brain Substantia Nigra	brain
15	chr7:99996400-100004800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:99996400-100005000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:99996600-100004800	Weak transcription	Primary B cells from cord blood	blood
18	chr7:99996600-100016800	Weak transcription	Brain Angular Gyrus	brain
19	chr7:99996600-100017000	Weak transcription	Adipose Nuclei	Adipose
20	chr7:99997000-100016000	Weak transcription	Ovary	ovary
21	chr7:99997400-100025600	Weak transcription	Aorta	Aorta
22	chr7:99997800-100005000	Weak transcription	Thymus	Thymus
23	chr7:99998200-100002800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:99998800-100008200	Weak transcription	Lung	lung
25	chr7:99998800-100025400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:99999000-100025400	Weak transcription	Left Ventricle	heart
27	chr7:99999400-100025400	Weak transcription	Psoas Muscle	Psoas
28	chr7:100000200-100002000	Weak transcription	Brain Anterior Caudate	brain
29	chr7:100000200-100003800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:100000200-100004800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr7:100000200-100013000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:100000200-100016800	Weak transcription	Brain Hippocampus Middle	brain
33	chr7:100000200-100025400	Weak transcription	Liver	Liver
34	chr7:100000400-100002200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:100000400-100004000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:100001400-100003400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:100001400-100009800	Strong transcription	Primary monocytes fromperipheralblood	blood

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