Variant report

Variant	rs73401466
Chromosome Location	chr7:99998432-99998433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99997930..100000096-chr7:100032489..100035082,2	MCF-7	breast:
2	chr7:99997080..99998657-chr7:100065491..100067387,2	K562	blood:
3	chr7:99998151..99998794-chr7:100166668..100167627,2	K562	blood:
4	chr7:99998315..99998934-chr7:100080562..100081514,3	K562	blood:
5	chr7:99988956..99991156-chr7:99997016..99999433,2	K562	blood:
6	chr7:99998039..99998786-chr7:100080764..100081310,2	MCF-7	breast:
7	chr7:99997615..100000577-chr7:100006796..100009409,2	MCF-7	breast:
8	chr7:99998022..99998898-chr7:100157111..100158021,3	K562	blood:
9	chr7:99996906..99999083-chr7:100081526..100083069,2	K562	blood:
10	chr7:99991415..99995291-chr7:99995877..99999195,3	K562	blood:
11	chr7:99994345..99998458-chr7:100026000..100028986,4	K562	blood:
12	chr7:99998365..99999295-chr7:100047897..100048661,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166925	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000266372	Chromatin interaction
ENSG00000166924	Chromatin interaction
ENSG00000160813	Chromatin interaction
ENSG00000241357	Chromatin interaction
ENSG00000240211	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10256481	1.00[AMR][1000 genomes]
rs57310628	1.00[AMR][1000 genomes]
rs58497263	1.00[AMR][1000 genomes]
rs59251177	1.00[AMR][1000 genomes]
rs59338670	1.00[AFR][1000 genomes]
rs61246011	1.00[AMR][1000 genomes]
rs61611428	1.00[AMR][1000 genomes]
rs68049253	1.00[AMR][1000 genomes]
rs6958977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968343	1.00[AMR][1000 genomes]
rs6970350	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399601	1.00[AMR][1000 genomes]
rs73401410	1.00[AMR][1000 genomes]
rs73401448	1.00[AMR][1000 genomes]
rs73401452	1.00[AMR][1000 genomes]
rs73401469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401478	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403324	1.00[AMR][1000 genomes]
rs7796885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99940800-100014600	Weak transcription	Right Atrium	heart
2	chr7:99962400-100020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:99973000-99999400	Weak transcription	Brain Anterior Caudate	brain
4	chr7:99987800-100025400	Weak transcription	Right Ventricle	heart
5	chr7:99988600-99999800	Weak transcription	Gastric	stomach
6	chr7:99995000-99998800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:99995000-100025400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:99995000-100026000	Weak transcription	Primary T cells from cord blood	blood
9	chr7:99995200-100005000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:99995600-100004400	Weak transcription	GM12878-XiMat	blood
11	chr7:99995600-100004800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:99995800-100005200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:99995800-100005200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:99996000-99999800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:99996000-100006800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:99996200-100000800	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:99996200-100001200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:99996200-100007200	Weak transcription	Spleen	Spleen
19	chr7:99996200-100013800	Weak transcription	Fetal Stomach	stomach
20	chr7:99996200-100025400	Weak transcription	Brain Substantia Nigra	brain
21	chr7:99996400-100004800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:99996400-100005000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:99996600-100000200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr7:99996600-100000200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:99996600-100004800	Weak transcription	Primary B cells from cord blood	blood
26	chr7:99996600-100016800	Weak transcription	Brain Angular Gyrus	brain
27	chr7:99996600-100017000	Weak transcription	Adipose Nuclei	Adipose
28	chr7:99996800-99999800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr7:99997000-100016000	Weak transcription	Ovary	ovary
30	chr7:99997400-100000400	Weak transcription	Brain Germinal Matrix	brain
31	chr7:99997400-100025600	Weak transcription	Aorta	Aorta
32	chr7:99997600-99999400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:99997800-100005000	Weak transcription	Thymus	Thymus
34	chr7:99998000-99998800	Strong transcription	Brain Cingulate Gyrus	brain
35	chr7:99998000-99999000	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr7:99998200-99998800	Enhancers	K562	blood
37	chr7:99998200-100000200	Strong transcription	Brain Hippocampus Middle	brain
38	chr7:99998200-100002800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:99998400-99998800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr7:99998400-99998800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:99998400-99998800	ZNF genes & repeats	Lung	lung
42	chr7:99998400-100000200	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links