Variant report

Variant	rs73401452
Chromosome Location	chr7:99984861-99984862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99983658..99989026-chr7:100025931..100030707,8	MCF-7	breast:
2	chr7:99983162..99986044-chr7:99986515..99990013,3	MCF-7	breast:
3	chr7:99953256..99956162-chr7:99984364..99987051,2	K562	blood:

Variant related genes	Relation type
ENSG00000078487	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000121716	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10256481	1.00[AMR][1000 genomes]
rs1059126	0.90[AFR][1000 genomes]
rs57310628	1.00[AMR][1000 genomes]
rs58497263	1.00[AMR][1000 genomes]
rs59251177	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61246011	1.00[AMR][1000 genomes]
rs61611428	1.00[AMR][1000 genomes]
rs68049253	1.00[AMR][1000 genomes]
rs6958977	1.00[AMR][1000 genomes]
rs6968343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6970350	1.00[AMR][1000 genomes]
rs73399595	0.87[AFR][1000 genomes]
rs73399601	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401410	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401448	1.00[AMR][1000 genomes]
rs73401466	1.00[AMR][1000 genomes]
rs73401469	1.00[AMR][1000 genomes]
rs73401478	1.00[AMR][1000 genomes]
rs73403324	1.00[AMR][1000 genomes]
rs7796885	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99940800-100014600	Weak transcription	Right Atrium	heart
2	chr7:99960600-99985200	Weak transcription	Aorta	Aorta
3	chr7:99962400-100020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:99966400-99998000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:99972600-99996000	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:99972800-99987400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:99972800-99994800	Weak transcription	Spleen	Spleen
8	chr7:99973000-99999400	Weak transcription	Brain Anterior Caudate	brain
9	chr7:99973600-99987400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:99976200-99998200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:99977000-99989800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:99980600-99985600	Genic enhancers	Primary monocytes fromperipheralblood	blood
13	chr7:99981800-99987400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:99982600-99985000	Weak transcription	Adipose Nuclei	Adipose
15	chr7:99982800-99987400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:99983200-99987200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:99984200-99985400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr7:99984600-99985000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr7:99984600-99985200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr7:99984600-99985400	Enhancers	Fetal Heart	heart
21	chr7:99984600-99985400	Enhancers	GM12878-XiMat	blood
22	chr7:99984800-99985400	Enhancers	Pancreas	Pancrea

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