Variant report

Variant	rs6961583
Chromosome Location	chr7:120420425-120420426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10266755	0.82[ASN][1000 genomes]
rs13231854	0.82[ASN][1000 genomes]
rs2107275	0.82[ASN][1000 genomes]
rs3735467	0.82[ASN][1000 genomes]
rs3779386	0.82[ASN][1000 genomes]
rs3779389	0.81[ASN][1000 genomes]
rs3823861	0.82[ASN][1000 genomes]
rs41611	0.88[ASN][1000 genomes]
rs41621	0.84[ASN][1000 genomes]
rs41624	0.83[ASN][1000 genomes]
rs41627	0.83[ASN][1000 genomes]
rs41628	0.83[ASN][1000 genomes]
rs41629	0.83[ASN][1000 genomes]
rs41632	0.82[ASN][1000 genomes]
rs4445165	0.81[ASN][1000 genomes]
rs6971854	0.82[ASN][1000 genomes]
rs73427805	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120414800-120421200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120416400-120424800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:120418200-120423400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:120418600-120423000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:120419800-120423800	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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