Variant report

Variant	rs6961848
Chromosome Location	chr7:25898723-25898724
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25897759..25900219-chr7:26237473..26240299,2	MCF-7	breast:
2	chr7:25894581..25899810-chr7:26238604..26243593,7	K562	blood:
3	chr7:25893947..25899810-chr7:26238759..26243593,6	K562	blood:
4	chr7:25896710..25899572-chr7:25900375..25902445,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10232819	0.81[ASN][1000 genomes]
rs11976790	0.81[ASN][1000 genomes]
rs12700664	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700666	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13231733	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376527	0.81[ASN][1000 genomes]
rs17152823	0.89[AFR][1000 genomes]
rs1812673	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4722531	0.81[ASN][1000 genomes]
rs6461887	0.81[ASN][1000 genomes]
rs6958350	0.81[ASN][1000 genomes]
rs7793216	0.81[ASN][1000 genomes]
rs979165	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25895000-25898800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr7:25897000-25899000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr7:25897200-25898800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
4	chr7:25897200-25898800	Bivalent Enhancer	Fetal Stomach	stomach
5	chr7:25897200-25899000	Bivalent Enhancer	Fetal Thymus	thymus
6	chr7:25897400-25899000	Bivalent Enhancer	Colon Smooth Muscle	Colon
7	chr7:25897400-25900800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr7:25897600-25898800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr7:25897600-25899000	Bivalent Enhancer	Fetal Intestine Small	intestine
10	chr7:25897600-25899000	Bivalent Enhancer	Placenta	Placenta
11	chr7:25897600-25900000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:25897600-25900800	ZNF genes & repeats	GM12878-XiMat	blood
13	chr7:25897800-25898800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr7:25897800-25899000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
15	chr7:25897800-25899200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr7:25897800-25901000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:25897800-25901200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:25897800-25901200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:25898000-25898800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr7:25898000-25898800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:25898000-25899000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
22	chr7:25898000-25899400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:25898000-25899600	Weak transcription	NHDF-Ad	bronchial
24	chr7:25898000-25900000	Weak transcription	Osteobl	bone
25	chr7:25898000-25901200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:25898200-25898800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
27	chr7:25898200-25898800	Bivalent Enhancer	Right Ventricle	heart
28	chr7:25898200-25899000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:25898200-25899000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:25898200-25899200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:25898200-25899200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr7:25898200-25899200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr7:25898200-25901200	Weak transcription	HSMM	muscle
34	chr7:25898400-25898800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:25898400-25898800	Bivalent Enhancer	Thymus	Thymus
36	chr7:25898400-25899000	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:25898400-25899000	Bivalent/Poised TSS	Colonic Mucosa	Colon
38	chr7:25898400-25899000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
39	chr7:25898400-25899000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
40	chr7:25898400-25900000	Weak transcription	K562	blood
41	chr7:25898400-25900000	Weak transcription	NHEK	skin
42	chr7:25898400-25901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:25898400-25901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:25898600-25898800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
45	chr7:25898600-25898800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
46	chr7:25898600-25899000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
47	chr7:25898600-25899000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
48	chr7:25898600-25899000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
49	chr7:25898600-25899000	Enhancers	Rectal Mucosa Donor 29	rectum

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