Variant report

Variant	rs1376527
Chromosome Location	chr7:25876805-25876806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25874523..25877275-chr7:25878833..25881768,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10225976	0.99[EUR][1000 genomes]
rs10232819	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241659	0.97[EUR][1000 genomes]
rs10261019	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10271088	0.95[EUR][1000 genomes]
rs10271460	0.97[EUR][1000 genomes]
rs10274306	0.97[EUR][1000 genomes]
rs10951112	0.93[ASN][1000 genomes]
rs11770186	0.83[CEU][hapmap]
rs11976790	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535837	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12666961	0.84[CEU][hapmap]
rs12700664	0.81[ASN][1000 genomes]
rs12700666	0.81[ASN][1000 genomes]
rs12700667	0.85[CEU][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13231733	0.81[ASN][1000 genomes]
rs1451382	0.97[EUR][1000 genomes]
rs1451383	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1451385	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2060765	0.89[EUR][1000 genomes]
rs2893220	0.97[EUR][1000 genomes]
rs3902751	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4722526	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4722527	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4722528	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4722529	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4722530	0.93[ASN][1000 genomes]
rs4722531	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376645	0.94[EUR][1000 genomes]
rs60643312	0.99[EUR][1000 genomes]
rs61140461	0.97[EUR][1000 genomes]
rs62447896	0.97[EUR][1000 genomes]
rs6461887	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958350	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961848	0.81[ASN][1000 genomes]
rs7782246	0.95[EUR][1000 genomes]
rs7782292	0.97[EUR][1000 genomes]
rs7793216	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798431	0.97[EUR][1000 genomes]
rs979165	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9987000	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25869600-25881800	Weak transcription	Right Atrium	heart
2	chr7:25871200-25885400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:25871800-25879400	Weak transcription	Psoas Muscle	Psoas
4	chr7:25872000-25881600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:25872200-25881400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:25872200-25886200	Weak transcription	NHLF	lung
7	chr7:25872400-25885200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:25874000-25879200	Weak transcription	Fetal Heart	heart
9	chr7:25875000-25878800	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:25875000-25881200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:25875200-25880000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:25875800-25877200	Enhancers	Fetal Stomach	stomach
13	chr7:25876800-25878600	Weak transcription	Aorta	Aorta
14	chr7:25876800-25885000	Weak transcription	Fetal Kidney	kidney

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