Variant report

Variant	rs4722529
Chromosome Location	chr7:25880011-25880012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25751339..25752861-chr7:25879316..25882224,2	MCF-7	breast:
2	chr7:25878624..25881558-chr7:25895267..25897783,2	K562	blood:
3	chr7:25878574..25880347-chr7:25882130..25884614,2	K562	blood:
4	chr7:25874523..25877275-chr7:25878833..25881768,2	K562	blood:
5	chr7:25878624..25881558-chr7:25895080..25897783,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10225976	0.95[EUR][1000 genomes]
rs10232819	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10241659	0.95[EUR][1000 genomes]
rs10261019	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10271088	0.93[EUR][1000 genomes]
rs10271460	0.95[EUR][1000 genomes]
rs10274306	0.95[EUR][1000 genomes]
rs10951112	0.91[ASN][1000 genomes]
rs11770186	0.83[CEU][hapmap]
rs11976790	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12535837	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12666961	0.84[CEU][hapmap]
rs12700667	0.85[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1376527	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1451382	0.95[EUR][1000 genomes]
rs1451383	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1451385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2060765	0.85[EUR][1000 genomes]
rs2893220	0.95[EUR][1000 genomes]
rs3902751	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4722526	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4722527	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4722528	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4722530	0.91[ASN][1000 genomes]
rs4722531	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56376645	0.92[EUR][1000 genomes]
rs60643312	0.95[EUR][1000 genomes]
rs61140461	0.95[EUR][1000 genomes]
rs62447896	0.95[EUR][1000 genomes]
rs6461887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6958350	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7782246	0.93[EUR][1000 genomes]
rs7782292	0.95[EUR][1000 genomes]
rs7793216	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7798431	0.95[EUR][1000 genomes]
rs979165	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9987000	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25869600-25881800	Weak transcription	Right Atrium	heart
2	chr7:25871200-25885400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:25872000-25881600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:25872200-25881400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:25872200-25886200	Weak transcription	NHLF	lung
6	chr7:25872400-25885200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:25875000-25881200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:25876800-25885000	Weak transcription	Fetal Kidney	kidney
9	chr7:25877200-25881200	Weak transcription	Fetal Stomach	stomach
10	chr7:25878800-25882000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:25879200-25880400	Enhancers	Aorta	Aorta
12	chr7:25879200-25883000	Enhancers	Fetal Heart	heart
13	chr7:25879200-25884200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr7:25879400-25883000	Enhancers	Psoas Muscle	Psoas
15	chr7:25879800-25880600	Enhancers	Fetal Muscle Leg	muscle
16	chr7:25880000-25880400	Enhancers	Ovary	ovary
17	chr7:25880000-25881000	Enhancers	Colon Smooth Muscle	Colon
18	chr7:25880000-25888800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:25880000-25889000	Enhancers	Skeletal Muscle Male	skeletal muscle

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