Variant report

Variant	rs1451383
Chromosome Location	chr7:25891809-25891810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59486909..59487865-chr7:25891255..25892006,2	MCF-7	breast:
2	chr7:25891320..25893042-chr7:25894595..25897680,4	K562	blood:
3	chr7:25760089..25760596-chr7:25891195..25891843,2	K562	blood:
4	chr7:25429985..25431381-chr7:25890913..25891910,5	MCF-7	breast:
5	chr7:25883299..25886536-chr7:25889518..25893858,4	K562	blood:
6	chr7:25889250..25893042-chr7:25894239..25896921,6	K562	blood:
7	chr7:25605406..25606179-chr7:25890948..25891905,5	K562	blood:
8	chr7:25608198..25609026-chr7:25891099..25891911,6	MCF-7	breast:
9	chr7:25605147..25606187-chr7:25890189..25892015,14	MCF-7	breast:

No data

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10225976	0.91[EUR][1000 genomes]
rs10232819	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10241659	0.91[EUR][1000 genomes]
rs10261019	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10271088	0.90[EUR][1000 genomes]
rs10271460	0.91[EUR][1000 genomes]
rs10274306	0.91[EUR][1000 genomes]
rs10951112	0.87[ASN][1000 genomes]
rs11976790	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12535837	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12700667	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1376527	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1451382	0.91[EUR][1000 genomes]
rs1451385	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2060765	0.82[EUR][1000 genomes]
rs2893220	0.91[EUR][1000 genomes]
rs3902751	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4722526	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4722527	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4722528	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4722529	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4722530	0.87[ASN][1000 genomes]
rs4722531	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56376645	0.93[EUR][1000 genomes]
rs60643312	0.91[EUR][1000 genomes]
rs61140461	0.91[EUR][1000 genomes]
rs62447896	0.91[EUR][1000 genomes]
rs6461887	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6958350	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7782246	0.90[EUR][1000 genomes]
rs7782292	0.91[EUR][1000 genomes]
rs7793216	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7798431	0.91[EUR][1000 genomes]
rs979165	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9987000	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25882200-25892000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:25883800-25892600	Enhancers	Fetal Lung	lung
3	chr7:25890200-25892800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr7:25890200-25895200	Weak transcription	HSMMtube	muscle
5	chr7:25890400-25892200	Enhancers	Ovary	ovary
6	chr7:25890400-25892800	Bivalent Enhancer	Fetal Intestine Small	intestine
7	chr7:25890600-25892200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:25890600-25893000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:25890800-25892200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:25890800-25892800	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr7:25890800-25892800	Enhancers	Pancreas	Pancrea
12	chr7:25891000-25892600	Bivalent Enhancer	Fetal Brain Male	brain
13	chr7:25891000-25892800	Bivalent Enhancer	Stomach Mucosa	stomach
14	chr7:25891000-25892800	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr7:25891000-25894200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
16	chr7:25891200-25892000	Bivalent Enhancer	Fetal Heart	heart
17	chr7:25891200-25892000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr7:25891200-25892200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:25891200-25892600	Active TSS	H9 Cell Line	embryonic stem cell
20	chr7:25891200-25892800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:25891400-25892000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:25891400-25892000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr7:25891400-25892000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
24	chr7:25891400-25892000	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr7:25891400-25892000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
26	chr7:25891400-25892000	Bivalent Enhancer	Liver	Liver
27	chr7:25891400-25892000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr7:25891400-25892000	Flanking Active TSS	NHEK	skin
29	chr7:25891400-25892000	Flanking Active TSS	Osteobl	bone
30	chr7:25891400-25892200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:25891400-25892200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:25891400-25892400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:25891400-25892600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
34	chr7:25891400-25892600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
35	chr7:25891400-25892600	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
36	chr7:25891400-25892600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
37	chr7:25891400-25892800	Bivalent Enhancer	Primary B cells from cord blood	blood
38	chr7:25891400-25892800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
39	chr7:25891400-25892800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
40	chr7:25891400-25892800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
41	chr7:25891400-25892800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:25891400-25892800	Weak transcription	Fetal Kidney	kidney
43	chr7:25891400-25893000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr7:25891600-25892000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:25891600-25892000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:25891600-25892000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:25891600-25892000	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:25891600-25892000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
49	chr7:25891600-25892000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
50	chr7:25891600-25892000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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