Variant report

Variant	rs6963019
Chromosome Location	chr7:52996952-52996953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1389275	1.00[AMR][1000 genomes]
rs1389276	1.00[AMR][1000 genomes]
rs1389277	1.00[AMR][1000 genomes]
rs1807977	1.00[AMR][1000 genomes]
rs57300183	1.00[AMR][1000 genomes]
rs57837706	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60762773	1.00[AMR][1000 genomes]
rs60881982	1.00[AMR][1000 genomes]
rs73349268	1.00[AMR][1000 genomes]
rs73349270	1.00[AMR][1000 genomes]
rs73349275	1.00[AMR][1000 genomes]
rs73349299	1.00[AMR][1000 genomes]
rs73351104	1.00[AMR][1000 genomes]
rs73351146	1.00[AMR][1000 genomes]
rs73351181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73351193	1.00[AMR][1000 genomes]
rs73353034	1.00[AMR][1000 genomes]
rs73355231	1.00[AMR][1000 genomes]
rs73355235	1.00[AMR][1000 genomes]
rs73355245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52996200-52997200	Flanking Active TSS	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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