Variant report

Variant	rs73349275
Chromosome Location	chr7:52953331-52953332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1389275	1.00[AMR][1000 genomes]
rs1389276	1.00[AMR][1000 genomes]
rs1389277	1.00[AMR][1000 genomes]
rs1807977	1.00[AMR][1000 genomes]
rs57300183	1.00[AMR][1000 genomes]
rs57447622	1.00[AMR][1000 genomes]
rs57837706	1.00[AMR][1000 genomes]
rs59359855	1.00[AMR][1000 genomes]
rs60762773	1.00[AMR][1000 genomes]
rs60881982	1.00[AMR][1000 genomes]
rs6963019	1.00[AMR][1000 genomes]
rs73349268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349299	1.00[AMR][1000 genomes]
rs73351104	1.00[AMR][1000 genomes]
rs73351146	1.00[AMR][1000 genomes]
rs73351181	1.00[AMR][1000 genomes]
rs73351193	1.00[AMR][1000 genomes]
rs73353034	1.00[AMR][1000 genomes]
rs73355231	1.00[AMR][1000 genomes]
rs73355235	1.00[AMR][1000 genomes]
rs73355245	1.00[AMR][1000 genomes]
rs73357944	1.00[AMR][1000 genomes]
rs73357996	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017323	chr7:52919418-52982242	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020427	chr7:52922636-52989552	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52952600-52954000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:52952600-52954000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:52952800-52953600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:52952800-52953600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:52952800-52953800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:52953000-52953800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr7:52953200-52954000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr7:52953200-52954000	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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