Variant report

Variant	rs73351104
Chromosome Location	chr7:52971687-52971688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1389275	1.00[AMR][1000 genomes]
rs1389276	1.00[AMR][1000 genomes]
rs1389277	1.00[AMR][1000 genomes]
rs1807977	1.00[AMR][1000 genomes]
rs57300183	1.00[AMR][1000 genomes]
rs57837706	1.00[AMR][1000 genomes]
rs59359855	1.00[AMR][1000 genomes]
rs60762773	1.00[AMR][1000 genomes]
rs60881982	1.00[AMR][1000 genomes]
rs6963019	1.00[AMR][1000 genomes]
rs73349268	1.00[AMR][1000 genomes]
rs73349270	1.00[AMR][1000 genomes]
rs73349275	1.00[AMR][1000 genomes]
rs73349299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73351146	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73351181	1.00[AMR][1000 genomes]
rs73351193	1.00[AMR][1000 genomes]
rs73353034	1.00[AMR][1000 genomes]
rs73355231	1.00[AMR][1000 genomes]
rs73355235	1.00[AMR][1000 genomes]
rs73355245	1.00[AMR][1000 genomes]
rs73357944	1.00[AMR][1000 genomes]
rs73357996	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017323	chr7:52919418-52982242	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020427	chr7:52922636-52989552	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv538844	chr7:52963913-52989049	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52970800-52971800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:52971000-52971800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:52971200-52972000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:52971200-52972200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:52971400-52971800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:52971400-52972000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:52971400-52972400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:52971400-52972800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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