Variant report

Variant	rs6963445
Chromosome Location	chr7:151011775-151011776
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:151007559..151010367-chr7:151010693..151013847,5	K562	blood:
2	chr7:151011534..151013042-chr7:151145445..151146403,11	K562	blood:
3	chr7:151009471..151012470-chr7:151038728..151041715,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000013374	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12671664	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2142171	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs378140	0.96[ASN][1000 genomes]
rs390555	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60755797	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62492424	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6977945	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6978515	0.99[ASN][1000 genomes]
rs7810819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7811116	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs917403	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9640172	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368227	chr7:151008519-151012117	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151010000-151012200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:151010000-151012200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr7:151010200-151012000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:151010400-151011800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:151010400-151011800	Enhancers	NHLF	lung
6	chr7:151010400-151012000	Weak transcription	Dnd41	blood
7	chr7:151010800-151011800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:151010800-151011800	Enhancers	NHDF-Ad	bronchial
9	chr7:151010800-151011800	Enhancers	Osteobl	bone
10	chr7:151010800-151012000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:151010800-151012200	Enhancers	Adipose Nuclei	Adipose
12	chr7:151010800-151012600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr7:151010800-151015800	Weak transcription	Right Atrium	heart
14	chr7:151011000-151012200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:151011200-151012200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:151011200-151012800	Enhancers	Stomach Mucosa	stomach
17	chr7:151011400-151012000	Enhancers	Brain Hippocampus Middle	brain
18	chr7:151011600-151012000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:151011600-151012200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:151011600-151012400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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