Variant report

Variant	rs9640172
Chromosome Location	chr7:151025947-151025948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12671664	0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2142171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs378140	0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs60755797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62492424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6963445	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6977945	0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6978515	0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7810819	0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7811116	0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs917403	0.90[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794696	chr7:151023630-151049503	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151019800-151029800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:151025000-151026200	Enhancers	Small Intestine	intestine
3	chr7:151025000-151029600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:151025200-151026400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:151025400-151026200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr7:151025400-151026200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:151025400-151026200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:151025400-151026200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:151025400-151026200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:151025600-151026200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:151025600-151026200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr7:151025600-151026200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:151025800-151026000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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