Variant report

Variant	rs917403
Chromosome Location	chr7:151012316-151012317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:151011871..151012769-chr7:151039640..151040156,2	MCF-7	breast:
2	chr7:150869382..150869909-chr7:151012274..151012812,2	K562	blood:
3	chr7:151011847..151012777-chr7:151479713..151480213,2	K562	blood:
4	chr7:151011864..151012464-chr7:151385043..151385782,2	K562	blood:
5	chr7:151011817..151012794-chr7:151048314..151048902,2	K562	blood:
6	chr7:151011833..151013285-chr7:151046969..151048654,9	MCF-7	breast:
7	chr7:151011867..151012792-chr7:151046918..151048035,4	K562	blood:
8	chr7:151007559..151010367-chr7:151010693..151013847,5	K562	blood:
9	chr7:151011836..151012855-chr7:151047204..151048404,5	MCF-7	breast:
10	chr7:151011858..151012796-chr7:151456326..151457276,5	K562	blood:
11	chr7:151011534..151013042-chr7:151145445..151146403,11	K562	blood:
12	chr7:151009471..151012470-chr7:151038728..151041715,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12671664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2142171	0.99[ASN][1000 genomes]
rs378140	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs390555	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60755797	0.99[ASN][1000 genomes]
rs62492424	0.99[ASN][1000 genomes]
rs6963445	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6977945	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.99[ASN][1000 genomes]
rs6978515	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7810819	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7811116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9640172	0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs917403	NUB1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151010800-151012600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr7:151010800-151015800	Weak transcription	Right Atrium	heart
3	chr7:151011200-151012800	Enhancers	Stomach Mucosa	stomach
4	chr7:151011600-151012400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:151011800-151012400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr7:151011800-151012400	Enhancers	Primary hematopoietic stem cells	blood
7	chr7:151012000-151012400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:151012000-151012400	Enhancers	Primary B cells from peripheral blood	blood
9	chr7:151012000-151012400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr7:151012000-151012400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:151012000-151012400	Flanking Active TSS	Dnd41	blood
12	chr7:151012200-151012600	Enhancers	Primary B cells from cord blood	blood
13	chr7:151012200-151014400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:151012200-151014400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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