Variant report
| Variant | rs6965803 |
|---|---|
| Chromosome Location | chr7:112378243-112378244 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TMEM168-1 | chr7:112377832-112378748 | NONHSAT122799 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10227777 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10228144 | 1.00[EUR][1000 genomes] |
| rs10232962 | 1.00[EUR][1000 genomes] |
| rs10241709 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10265199 | 1.00[EUR][1000 genomes] |
| rs10268162 | 1.00[EUR][1000 genomes] |
| rs10277252 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12112671 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17159980 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17160084 | 1.00[EUR][1000 genomes] |
| rs1868588 | 1.00[EUR][1000 genomes] |
| rs2060636 | 1.00[EUR][1000 genomes] |
| rs28435304 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28584529 | 1.00[EUR][1000 genomes] |
| rs28601694 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28624855 | 1.00[EUR][1000 genomes] |
| rs2905281 | 1.00[EUR][1000 genomes] |
| rs2905282 | 1.00[EUR][1000 genomes] |
| rs6964755 | 1.00[EUR][1000 genomes] |
| rs6968530 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7341402 | 1.00[EUR][1000 genomes] |
| rs73715667 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73715677 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73718117 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73718119 | 1.00[EUR][1000 genomes] |
| rs73718130 | 1.00[EUR][1000 genomes] |
| rs73718137 | 1.00[EUR][1000 genomes] |
| rs7778342 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7806160 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:112364600-112388400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:112374800-112384600 | Weak transcription | Fetal Heart | heart |
