Variant report

Variant	rs6967398
Chromosome Location	chr7:3146983-3146984
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1011189	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10499320	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10951041	1.00[ASN][1000 genomes]
rs11772425	1.00[ASN][1000 genomes]
rs11983132	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700543	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17239772	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4722398	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6949212	0.81[ASN][1000 genomes]
rs6965655	1.00[ASN][1000 genomes]
rs6968867	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971695	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73033516	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044327	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73050253	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73050254	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73050272	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73050273	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73050289	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs747248	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7792757	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7793674	0.86[EUR][1000 genomes]
rs7801254	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7802299	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs7805429	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7809283	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811825	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8180717	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1020680	chr7:3125512-3204521	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1027945	chr7:3125512-3208071	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1015656	chr7:3131821-3321353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1023566	chr7:3134090-3159323	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv464262	chr7:3134593-3155813	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv605876	chr7:3134593-3155813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv605877	chr7:3134593-3157702	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1027009	chr7:3141609-3311344	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv538658	chr7:3141609-3311344	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3141400-3148000	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr7:3142000-3156200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:3144200-3148000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr7:3144200-3152200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:3145400-3147400	Enhancers	Pancreas	Pancrea
6	chr7:3145400-3148200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:3145600-3147800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:3145600-3148000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:3145600-3148000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr7:3145600-3148000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:3145800-3147800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr7:3145800-3148200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr7:3146000-3147800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr7:3146000-3148200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:3146200-3147800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr7:3146400-3147000	Enhancers	Primary B cells from cord blood	blood
17	chr7:3146600-3152000	Weak transcription	Primary T cells from cord blood	blood
18	chr7:3146800-3152200	Weak transcription	Fetal Thymus	thymus

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