Variant report

Variant	rs6968584
Chromosome Location	chr7:22190635-22190636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22189471..22192377-chr7:22213016..22216005,2	MCF-7	breast:
2	chr7:22185300..22188269-chr7:22188611..22192346,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13310201	0.82[AMR][1000 genomes]
rs1981597	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3807528	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3807532	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6461639	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs951589	0.83[CEU][hapmap];0.83[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6968584	DNAH11,CDCA7L	cis	brain	BrainEAC

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22153000-22193000	Strong transcription	Dnd41	blood
2	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
3	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:22168000-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:22168000-22195800	Weak transcription	NHEK	skin
6	chr7:22175200-22193600	Weak transcription	HUVEC	blood vessel
7	chr7:22176200-22198200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:22176400-22203200	Weak transcription	Stomach Mucosa	stomach
9	chr7:22177800-22195800	Weak transcription	HMEC	breast
10	chr7:22179400-22191400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:22179600-22206600	Weak transcription	Fetal Stomach	stomach
12	chr7:22181400-22192800	Weak transcription	Right Ventricle	heart
13	chr7:22181400-22193600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:22181400-22199000	Weak transcription	Gastric	stomach
15	chr7:22181800-22193200	Weak transcription	Placenta	Placenta
16	chr7:22183600-22192400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:22183600-22192800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:22183600-22193000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:22184400-22193400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr7:22184400-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
22	chr7:22184800-22192600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:22185000-22192600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:22185400-22192400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:22186600-22193000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:22186800-22191800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:22187000-22191600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:22187000-22204800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:22187200-22192600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:22187200-22193600	Weak transcription	Adipose Nuclei	Adipose
31	chr7:22187200-22199000	Weak transcription	Fetal Brain Male	brain
32	chr7:22187400-22191400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:22187400-22192600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:22187400-22192600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:22187600-22193000	Weak transcription	Brain Germinal Matrix	brain
36	chr7:22187800-22190800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:22187800-22195600	Weak transcription	NHDF-Ad	bronchial
38	chr7:22187800-22196200	Weak transcription	Fetal Kidney	kidney
39	chr7:22188000-22195600	Weak transcription	GM12878-XiMat	blood
40	chr7:22189200-22192600	Enhancers	Brain Substantia Nigra	brain
41	chr7:22189200-22193200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:22189400-22192600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:22189400-22193000	Weak transcription	Primary B cells from cord blood	blood
44	chr7:22189400-22196000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr7:22189400-22196000	Weak transcription	Left Ventricle	heart
46	chr7:22189400-22197200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:22189600-22192600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:22189800-22191400	Weak transcription	Brain Hippocampus Middle	brain
49	chr7:22189800-22192600	Weak transcription	Brain Anterior Caudate	brain
50	chr7:22190000-22191200	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links