Variant report

Variant	rs13310201
Chromosome Location	chr7:22237478-22237479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22226022..22228135-chr7:22235562..22238353,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10248283	0.91[CEU][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10278086	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10807810	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11772760	0.91[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12700358	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1476686	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1981597	0.85[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes]
rs1981601	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs3807528	0.81[JPT][hapmap]
rs3807532	0.81[JPT][hapmap]
rs4719688	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6461639	0.82[JPT][hapmap];0.91[MEX][hapmap]
rs6957379	0.97[GIH][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs6968584	0.82[AMR][1000 genomes]
rs7780366	0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7801397	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs951589	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9639424	0.82[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13310201	NPY	cis	cerebellum	SCAN

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
3	chr7:22223200-22242600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
5	chr7:22225800-22246800	Strong transcription	Dnd41	blood
6	chr7:22227400-22245600	Strong transcription	HepG2	liver
7	chr7:22230400-22243000	Weak transcription	Gastric	stomach
8	chr7:22233400-22247600	Weak transcription	Psoas Muscle	Psoas
9	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:22233600-22238400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:22233600-22238400	Weak transcription	Spleen	Spleen
12	chr7:22233600-22238800	Weak transcription	Pancreas	Pancrea
13	chr7:22233600-22240600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:22233600-22240800	Weak transcription	Right Atrium	heart
15	chr7:22233600-22241400	Weak transcription	Aorta	Aorta
16	chr7:22233600-22242800	Weak transcription	Thymus	Thymus
17	chr7:22233600-22247600	Weak transcription	Right Ventricle	heart
18	chr7:22233600-22253600	Weak transcription	Esophagus	oesophagus
19	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:22233800-22239400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:22233800-22240600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr7:22233800-22242600	Weak transcription	Liver	Liver
23	chr7:22233800-22244000	Weak transcription	NHEK	skin
24	chr7:22233800-22247400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:22233800-22247400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:22234200-22240600	Strong transcription	Fetal Thymus	thymus
27	chr7:22234800-22238400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:22235000-22239600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:22235000-22240600	Weak transcription	Brain Angular Gyrus	brain
30	chr7:22235000-22240600	Weak transcription	Fetal Kidney	kidney
31	chr7:22235400-22240600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:22235400-22240600	Weak transcription	Fetal Intestine Large	intestine
33	chr7:22235600-22239400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:22235600-22253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
36	chr7:22236000-22239600	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:22236200-22240000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:22236400-22238000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
39	chr7:22236400-22240600	Weak transcription	Brain Substantia Nigra	brain
40	chr7:22236400-22249200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:22236600-22239200	Strong transcription	Fetal Intestine Small	intestine
42	chr7:22236800-22240400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:22236800-22240800	Weak transcription	Primary B cells from cord blood	blood
44	chr7:22236800-22240800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:22237000-22240400	Weak transcription	Brain Anterior Caudate	brain
46	chr7:22237200-22238000	Enhancers	H9 Cell Line	embryonic stem cell
47	chr7:22237400-22237600	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr7:22237400-22237600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr7:22237400-22237800	Weak transcription	Lung	lung
50	chr7:22237400-22240800	Weak transcription	Left Ventricle	heart

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