Variant report

Variant	rs6957379
Chromosome Location	chr7:22253441-22253442
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10248283	0.86[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10278086	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10807810	0.87[CEU][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11772760	0.87[CEU][hapmap]
rs12700358	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13310201	0.97[GIH][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1476686	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1981597	0.82[GIH][hapmap];0.92[MEX][hapmap]
rs4719688	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6461639	0.87[MEX][hapmap]
rs7780366	0.94[CEU][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7801397	0.87[CEU][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs951589	0.88[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs9639424	0.95[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6957379	IL6	cis	parietal	SCAN
rs6957379	NPY	cis	cerebellum	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
2	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:22233600-22253600	Weak transcription	Esophagus	oesophagus
4	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:22235600-22253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
7	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:22238800-22253600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:22243400-22255800	Weak transcription	Liver	Liver
11	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
12	chr7:22243600-22256600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:22243600-22258400	Weak transcription	Fetal Intestine Small	intestine
14	chr7:22244200-22258000	Weak transcription	Fetal Intestine Large	intestine
15	chr7:22244200-22258400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:22244200-22258600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:22244600-22258000	Weak transcription	Primary B cells from cord blood	blood
18	chr7:22244600-22259800	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:22244800-22256800	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:22247600-22256400	Enhancers	Brain Cingulate Gyrus	brain
21	chr7:22247800-22256400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr7:22247800-22258000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:22248200-22255400	Weak transcription	Right Ventricle	heart
24	chr7:22248800-22255800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:22249400-22253600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:22249400-22255200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr7:22249400-22255800	Weak transcription	Psoas Muscle	Psoas
28	chr7:22249600-22256000	Enhancers	Brain Substantia Nigra	brain
29	chr7:22249800-22256000	Strong transcription	HepG2	liver
30	chr7:22250000-22253600	Enhancers	Brain Anterior Caudate	brain
31	chr7:22250000-22253800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:22250000-22256800	Enhancers	Brain Angular Gyrus	brain
33	chr7:22250400-22253600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:22250400-22257800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:22250400-22258800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr7:22250800-22259400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:22250800-22261800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:22251000-22253800	Enhancers	Adipose Nuclei	Adipose
39	chr7:22251000-22258800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:22251200-22253600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:22251400-22258600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:22251600-22253600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:22251600-22253800	Weak transcription	Right Atrium	heart
44	chr7:22251600-22256000	Enhancers	Brain Hippocampus Middle	brain
45	chr7:22252000-22253800	Weak transcription	Aorta	Aorta
46	chr7:22252000-22254200	Weak transcription	Left Ventricle	heart
47	chr7:22252000-22255800	Weak transcription	Pancreas	Pancrea
48	chr7:22252200-22255800	Weak transcription	Lung	lung
49	chr7:22252400-22253800	Weak transcription	Fetal Thymus	thymus
50	chr7:22252400-22264000	Weak transcription	Spleen	Spleen

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