Variant report

Variant	rs1476686
Chromosome Location	chr7:22249369-22249370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22240872..22243800-chr7:22248891..22250642,2	MCF-7	breast:
2	chr7:22247507..22249732-chr7:22251326..22252864,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10248283	0.91[CEU][hapmap];0.80[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10278086	0.91[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10807810	0.91[CEU][hapmap];0.90[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11772760	0.91[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12700358	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13310201	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1981597	0.85[GIH][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap]
rs4719688	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6461639	0.82[MEX][hapmap]
rs6957379	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7780366	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7801397	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs951589	0.91[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9639424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1476686	NPY	cis	cerebellum	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
2	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:22233600-22253600	Weak transcription	Esophagus	oesophagus
4	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:22235600-22253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
7	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:22238800-22253600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:22239600-22251000	Weak transcription	Adipose Nuclei	Adipose
10	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:22243400-22255800	Weak transcription	Liver	Liver
12	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
13	chr7:22243600-22251400	Weak transcription	Lung	lung
14	chr7:22243600-22256600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr7:22243600-22258400	Weak transcription	Fetal Intestine Small	intestine
16	chr7:22244200-22251200	Weak transcription	Pancreas	Pancrea
17	chr7:22244200-22258000	Weak transcription	Fetal Intestine Large	intestine
18	chr7:22244200-22258400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:22244200-22258600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:22244600-22258000	Weak transcription	Primary B cells from cord blood	blood
21	chr7:22244600-22259800	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:22244800-22256800	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:22245800-22250400	Weak transcription	Fetal Lung	lung
24	chr7:22245800-22252600	Weak transcription	Fetal Kidney	kidney
25	chr7:22247000-22251400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:22247000-22251400	Enhancers	NHEK	skin
27	chr7:22247400-22251000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:22247400-22251200	Enhancers	Brain Hippocampus Middle	brain
29	chr7:22247400-22251200	Enhancers	HMEC	breast
30	chr7:22247600-22249400	Enhancers	Psoas Muscle	Psoas
31	chr7:22247600-22250200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:22247600-22250800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:22247600-22256400	Enhancers	Brain Cingulate Gyrus	brain
34	chr7:22247800-22256400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr7:22247800-22258000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:22248000-22253000	Strong transcription	Dnd41	blood
37	chr7:22248200-22249400	Enhancers	Primary B cells from peripheral blood	blood
38	chr7:22248200-22250000	Weak transcription	Right Atrium	heart
39	chr7:22248200-22250000	Weak transcription	HUVEC	blood vessel
40	chr7:22248200-22255400	Weak transcription	Right Ventricle	heart
41	chr7:22248400-22250000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:22248400-22250000	Weak transcription	Brain Angular Gyrus	brain
43	chr7:22248600-22250400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:22248600-22251200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:22248600-22251200	Weak transcription	Left Ventricle	heart
46	chr7:22248600-22252400	Strong transcription	Fetal Thymus	thymus
47	chr7:22248800-22250000	Weak transcription	Brain Anterior Caudate	brain
48	chr7:22248800-22250000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:22248800-22252800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:22248800-22255800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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