Variant report

Variant	rs10248283
Chromosome Location	chr7:22246659-22246660
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10278086	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807810	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11772760	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12700358	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13310201	0.91[CEU][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1476686	0.91[CEU][hapmap];0.80[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1981597	0.89[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs1981601	0.86[JPT][hapmap]
rs3807528	0.81[JPT][hapmap]
rs3807532	0.81[JPT][hapmap]
rs4719688	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6461639	0.82[JPT][hapmap];0.95[MEX][hapmap]
rs6957379	0.86[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7780366	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7801397	0.82[CEU][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs951589	0.86[CEU][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9639424	0.91[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10248283	NPY	cis	cerebellum	SCAN

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
2	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
3	chr7:22225800-22246800	Strong transcription	Dnd41	blood
4	chr7:22233400-22247600	Weak transcription	Psoas Muscle	Psoas
5	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:22233600-22247600	Weak transcription	Right Ventricle	heart
7	chr7:22233600-22253600	Weak transcription	Esophagus	oesophagus
8	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:22233800-22247400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:22233800-22247400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:22235600-22253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
13	chr7:22236400-22249200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:22238800-22253600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:22239600-22251000	Weak transcription	Adipose Nuclei	Adipose
17	chr7:22241000-22247000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:22242000-22247600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:22243200-22247600	Weak transcription	Aorta	Aorta
21	chr7:22243400-22255800	Weak transcription	Liver	Liver
22	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
23	chr7:22243600-22247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:22243600-22248000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:22243600-22248400	Weak transcription	Spleen	Spleen
26	chr7:22243600-22251400	Weak transcription	Lung	lung
27	chr7:22243600-22256600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr7:22243600-22258400	Weak transcription	Fetal Intestine Small	intestine
29	chr7:22244200-22251200	Weak transcription	Pancreas	Pancrea
30	chr7:22244200-22258000	Weak transcription	Fetal Intestine Large	intestine
31	chr7:22244200-22258400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:22244200-22258600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr7:22244400-22247600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:22244400-22247600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:22244400-22247600	Weak transcription	Right Atrium	heart
36	chr7:22244400-22248400	Weak transcription	Fetal Thymus	thymus
37	chr7:22244600-22247000	Weak transcription	NHEK	skin
38	chr7:22244600-22258000	Weak transcription	Primary B cells from cord blood	blood
39	chr7:22244600-22259800	Weak transcription	Colon Smooth Muscle	Colon
40	chr7:22244800-22247600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr7:22244800-22256800	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:22245200-22247600	Weak transcription	Brain Substantia Nigra	brain
43	chr7:22245400-22247400	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:22245600-22247400	Weak transcription	HepG2	liver
45	chr7:22245600-22247800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:22245600-22248000	Weak transcription	Brain Angular Gyrus	brain
47	chr7:22245800-22250400	Weak transcription	Fetal Lung	lung
48	chr7:22245800-22252600	Weak transcription	Fetal Kidney	kidney
49	chr7:22246000-22248000	Weak transcription	Brain Anterior Caudate	brain
50	chr7:22246000-22248800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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