Variant report

Variant	rs3807532
Chromosome Location	chr7:22187656-22187657
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr7:22186225-22189110	SK-N-SH	brain:	n/a	chr7:22188167-22188181 chr7:22188063-22188072
2	POLR2A	chr7:22187523-22188377	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22185300..22188269-chr7:22188611..22192346,3	K562	blood:
2	chr7:22187653..22189358-chr7:22192551..22194258,2	MCF-7	breast:

Variant related genes	Relation type
RAPGEF5	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10248283	0.81[JPT][hapmap]
rs10278086	0.81[JPT][hapmap]
rs10807810	0.81[JPT][hapmap]
rs11772760	0.81[JPT][hapmap]
rs13310201	0.81[JPT][hapmap]
rs1981597	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3807528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461639	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6968584	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs951589	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22153000-22193000	Strong transcription	Dnd41	blood
2	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
3	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:22163000-22187800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:22163000-22190600	Strong transcription	Fetal Thymus	thymus
6	chr7:22168000-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:22168000-22195800	Weak transcription	NHEK	skin
8	chr7:22174400-22190400	Strong transcription	HepG2	liver
9	chr7:22175200-22193600	Weak transcription	HUVEC	blood vessel
10	chr7:22176200-22198200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:22176400-22203200	Weak transcription	Stomach Mucosa	stomach
12	chr7:22177800-22195800	Weak transcription	HMEC	breast
13	chr7:22179400-22191400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:22179600-22206600	Weak transcription	Fetal Stomach	stomach
15	chr7:22181400-22192800	Weak transcription	Right Ventricle	heart
16	chr7:22181400-22193600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:22181400-22199000	Weak transcription	Gastric	stomach
18	chr7:22181800-22193200	Weak transcription	Placenta	Placenta
19	chr7:22183600-22188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:22183600-22192400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:22183600-22192800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:22183600-22193000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:22184200-22188000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:22184400-22188200	Weak transcription	Aorta	Aorta
25	chr7:22184400-22189800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:22184400-22193400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:22184400-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
29	chr7:22184800-22187800	Weak transcription	Primary B cells from cord blood	blood
30	chr7:22184800-22188200	Weak transcription	Spleen	Spleen
31	chr7:22184800-22192600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:22185000-22189000	Weak transcription	Left Ventricle	heart
33	chr7:22185000-22192600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:22185400-22188000	Weak transcription	Fetal Intestine Large	intestine
35	chr7:22185400-22188800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr7:22185400-22192400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:22185600-22188200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:22185600-22188400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:22185800-22187800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:22186200-22190000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr7:22186400-22188200	Weak transcription	Liver	Liver
42	chr7:22186600-22187800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:22186600-22187800	Genic enhancers	Brain Inferior Temporal Lobe	brain
44	chr7:22186600-22190000	Strong transcription	Esophagus	oesophagus
45	chr7:22186600-22193000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr7:22186800-22188000	Genic enhancers	Brain Hippocampus Middle	brain
47	chr7:22186800-22191800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr7:22187000-22187800	Weak transcription	Brain Substantia Nigra	brain
49	chr7:22187000-22191600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:22187000-22204800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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