Variant report

Variant	rs7780366
Chromosome Location	chr7:22251459-22251460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22247507..22249732-chr7:22251326..22252864,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10248283	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10278086	0.90[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10807810	0.89[CEU][hapmap];0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11772760	0.90[CEU][hapmap]
rs12700358	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13310201	0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1476686	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4719688	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6957379	0.94[CEU][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7801397	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs951589	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9639424	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
2	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:22233600-22253600	Weak transcription	Esophagus	oesophagus
4	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:22235600-22253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
7	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:22238800-22253600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:22243400-22255800	Weak transcription	Liver	Liver
11	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
12	chr7:22243600-22256600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:22243600-22258400	Weak transcription	Fetal Intestine Small	intestine
14	chr7:22244200-22258000	Weak transcription	Fetal Intestine Large	intestine
15	chr7:22244200-22258400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:22244200-22258600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:22244600-22258000	Weak transcription	Primary B cells from cord blood	blood
18	chr7:22244600-22259800	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:22244800-22256800	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:22245800-22252600	Weak transcription	Fetal Kidney	kidney
21	chr7:22247600-22256400	Enhancers	Brain Cingulate Gyrus	brain
22	chr7:22247800-22256400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr7:22247800-22258000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:22248000-22253000	Strong transcription	Dnd41	blood
25	chr7:22248200-22255400	Weak transcription	Right Ventricle	heart
26	chr7:22248600-22252400	Strong transcription	Fetal Thymus	thymus
27	chr7:22248800-22252800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:22248800-22255800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:22249400-22253600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr7:22249400-22255200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr7:22249400-22255800	Weak transcription	Psoas Muscle	Psoas
32	chr7:22249600-22256000	Enhancers	Brain Substantia Nigra	brain
33	chr7:22249800-22256000	Strong transcription	HepG2	liver
34	chr7:22250000-22253400	Enhancers	HUVEC	blood vessel
35	chr7:22250000-22253600	Enhancers	Brain Anterior Caudate	brain
36	chr7:22250000-22253800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:22250000-22256800	Enhancers	Brain Angular Gyrus	brain
38	chr7:22250400-22251600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:22250400-22252200	Enhancers	Fetal Lung	lung
40	chr7:22250400-22253400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr7:22250400-22253600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:22250400-22257800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:22250400-22258800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:22250800-22259400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:22250800-22261800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:22251000-22251600	Enhancers	Ovary	ovary
47	chr7:22251000-22251600	Enhancers	Right Atrium	heart
48	chr7:22251000-22253800	Enhancers	Adipose Nuclei	Adipose
49	chr7:22251000-22258800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:22251200-22251600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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