Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10226243	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs10229723	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs10246722	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs10264011	0.83[YRI][hapmap]
rs10264621	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10280805	0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs1117533	0.84[ASN][1000 genomes]
rs13231656	0.81[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs13232564	0.84[ASN][1000 genomes]
rs17140258	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2066956	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs2190275	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28636957	0.89[ASN][1000 genomes]
rs4721728	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs4721729	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs6950598	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs6969674	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs6972136	0.86[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6972767	0.86[AMR][1000 genomes]
rs71524260	0.83[ASN][1000 genomes]
rs7795954	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv887815	chr7:18931219-18958942	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887816	chr7:18935310-18959138	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18942000-18977400	Weak transcription	Aorta	Aorta
2	chr7:18955200-18956000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:18955200-18956000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:18955400-18956000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:18955400-18956000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:18955400-18956000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:18955400-18956000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:18955600-18955800	Flanking Active TSS	NHDF-Ad	bronchial
9	chr7:18955600-18956000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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