Variant report

Variant	rs71524260
Chromosome Location	chr7:18961758-18961759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10226243	0.94[ASN][1000 genomes]
rs10229723	0.93[ASN][1000 genomes]
rs10245874	0.88[ASN][1000 genomes]
rs10246722	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10264621	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10280805	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13232564	0.86[ASN][1000 genomes]
rs17140258	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2066956	0.91[ASN][1000 genomes]
rs4721728	0.92[ASN][1000 genomes]
rs4721729	0.92[ASN][1000 genomes]
rs6950598	0.93[ASN][1000 genomes]
rs6950979	0.86[ASN][1000 genomes]
rs6969316	0.83[ASN][1000 genomes]
rs6969674	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6972136	0.80[ASN][1000 genomes]
rs7455192	0.85[ASN][1000 genomes]
rs7795954	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18942000-18977400	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links