Variant report

Variant	rs6972136
Chromosome Location	chr7:18959381-18959382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10226243	0.94[GIH][hapmap];0.80[ASN][1000 genomes]
rs10229723	0.81[ASN][1000 genomes]
rs10245874	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs10246722	0.87[CEU][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs10264621	0.80[ASN][1000 genomes]
rs10280805	0.94[GIH][hapmap];0.82[ASN][1000 genomes]
rs1117533	0.90[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs13231656	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs17140258	0.81[ASN][1000 genomes]
rs2190275	0.90[ASN][1000 genomes]
rs28636957	0.92[ASN][1000 genomes]
rs6950979	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs6969316	0.86[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6969674	1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs6972767	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71524260	0.80[ASN][1000 genomes]
rs7795954	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18942000-18977400	Weak transcription	Aorta	Aorta
2	chr7:18958800-18959400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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