Variant report

Variant	rs6970356
Chromosome Location	chr7:19089438-19089439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1029435	1.00[ASN][1000 genomes]
rs11973490	1.00[ASN][1000 genomes]
rs11975429	1.00[ASN][1000 genomes]
rs11982017	1.00[ASN][1000 genomes]
rs11982021	1.00[ASN][1000 genomes]
rs2214313	1.00[ASN][1000 genomes]
rs58479714	1.00[ASN][1000 genomes]
rs59296569	1.00[ASN][1000 genomes]
rs60458493	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60603722	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61166660	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966480	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73314889	1.00[ASN][1000 genomes]
rs73314898	1.00[ASN][1000 genomes]
rs73314902	1.00[ASN][1000 genomes]
rs73316504	1.00[ASN][1000 genomes]
rs73316572	1.00[ASN][1000 genomes]
rs886226	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19082800-19100400	Weak transcription	HSMM	muscle
2	chr7:19085200-19091600	Weak transcription	NHDF-Ad	bronchial
3	chr7:19085400-19089800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:19086200-19101800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:19086600-19100000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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