Variant report

Variant	rs73314898
Chromosome Location	chr7:19070838-19070839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1016981	1.00[EUR][1000 genomes]
rs1029435	1.00[ASN][1000 genomes]
rs11973490	1.00[ASN][1000 genomes]
rs11975429	1.00[ASN][1000 genomes]
rs11982017	1.00[ASN][1000 genomes]
rs11982021	1.00[ASN][1000 genomes]
rs1468178	1.00[EUR][1000 genomes]
rs17140572	1.00[EUR][1000 genomes]
rs17140626	1.00[EUR][1000 genomes]
rs2011513	1.00[EUR][1000 genomes]
rs2097710	1.00[EUR][1000 genomes]
rs2106723	1.00[EUR][1000 genomes]
rs2214209	1.00[EUR][1000 genomes]
rs2214313	1.00[ASN][1000 genomes]
rs2263234	1.00[EUR][1000 genomes]
rs2428348	1.00[EUR][1000 genomes]
rs2521724	1.00[EUR][1000 genomes]
rs2521725	0.89[EUR][1000 genomes]
rs2521726	1.00[EUR][1000 genomes]
rs2521727	1.00[EUR][1000 genomes]
rs2521728	1.00[EUR][1000 genomes]
rs2521730	1.00[EUR][1000 genomes]
rs2521731	1.00[EUR][1000 genomes]
rs2521736	1.00[EUR][1000 genomes]
rs2717326	1.00[EUR][1000 genomes]
rs2717335	1.00[EUR][1000 genomes]
rs2717336	1.00[EUR][1000 genomes]
rs2717341	1.00[EUR][1000 genomes]
rs2717366	1.00[EUR][1000 genomes]
rs58479714	1.00[ASN][1000 genomes]
rs59296569	1.00[ASN][1000 genomes]
rs60603722	1.00[ASN][1000 genomes]
rs6966480	1.00[ASN][1000 genomes]
rs6970356	1.00[ASN][1000 genomes]
rs73314889	1.00[ASN][1000 genomes]
rs73314902	1.00[ASN][1000 genomes]
rs73316504	1.00[ASN][1000 genomes]
rs73316572	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323560	1.00[EUR][1000 genomes]
rs886226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs886228	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:19069200-19071000	Enhancers	Osteobl	bone
4	chr7:19069400-19071000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:19069600-19071000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:19069800-19071000	Enhancers	NHDF-Ad	bronchial
7	chr7:19070400-19082200	Weak transcription	HSMM	muscle
8	chr7:19070600-19071000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:19070600-19071000	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links