Variant report

Variant	rs2011513
Chromosome Location	chr7:19119774-19119775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC9-6	chr7:19118903-19120419	NONHSAT119376
2	lnc-HDAC9-6	chr7:19118903-19120418	ucscGeneNc_uc003sul_1

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1016981	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1468178	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17140572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140626	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2097710	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2106723	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2214209	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2263234	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2428348	1.00[EUR][1000 genomes]
rs2521724	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521725	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2521726	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521727	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521728	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521730	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521731	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521736	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2717326	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717335	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717336	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717341	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2717366	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73314898	1.00[EUR][1000 genomes]
rs73316572	1.00[EUR][1000 genomes]
rs73323560	1.00[EUR][1000 genomes]
rs886226	1.00[EUR][1000 genomes]
rs886228	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032503	chr7:19092460-19134995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1032126	chr7:19092460-19137228	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2761116	chr7:19092472-19136307	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv519024	chr7:19103926-19134119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19113800-19120000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:19118000-19120400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:19118200-19120400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:19118200-19120600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:19118600-19120000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:19118600-19120400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:19118600-19120800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:19118600-19121600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:19118800-19120000	Enhancers	NHEK	skin
10	chr7:19118800-19120200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:19118800-19120400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:19118800-19120400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:19118800-19120400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:19118800-19121000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:19119000-19119800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr7:19119000-19120000	Weak transcription	Placenta	Placenta
17	chr7:19119000-19134200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:19119200-19129000	Weak transcription	NHDF-Ad	bronchial
19	chr7:19119200-19146000	Weak transcription	HSMM	muscle
20	chr7:19119600-19120000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr7:19119600-19120000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:19119600-19128800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links