Variant report
| Variant | rs73316572 |
|---|---|
| Chromosome Location | chr7:19073759-19073760 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs1016981 | 1.00[EUR][1000 genomes] |
| rs1029435 | 1.00[ASN][1000 genomes] |
| rs11973490 | 1.00[ASN][1000 genomes] |
| rs11975429 | 1.00[ASN][1000 genomes] |
| rs11982017 | 1.00[ASN][1000 genomes] |
| rs11982021 | 1.00[ASN][1000 genomes] |
| rs1468178 | 1.00[EUR][1000 genomes] |
| rs17140572 | 1.00[EUR][1000 genomes] |
| rs17140626 | 1.00[EUR][1000 genomes] |
| rs2011513 | 1.00[EUR][1000 genomes] |
| rs2097710 | 1.00[EUR][1000 genomes] |
| rs2106723 | 1.00[EUR][1000 genomes] |
| rs2214209 | 1.00[EUR][1000 genomes] |
| rs2214313 | 1.00[ASN][1000 genomes] |
| rs2263234 | 1.00[EUR][1000 genomes] |
| rs2428348 | 1.00[EUR][1000 genomes] |
| rs2521724 | 1.00[EUR][1000 genomes] |
| rs2521725 | 0.89[EUR][1000 genomes] |
| rs2521726 | 1.00[EUR][1000 genomes] |
| rs2521727 | 1.00[EUR][1000 genomes] |
| rs2521728 | 1.00[EUR][1000 genomes] |
| rs2521730 | 1.00[EUR][1000 genomes] |
| rs2521731 | 1.00[EUR][1000 genomes] |
| rs2521736 | 1.00[EUR][1000 genomes] |
| rs2717326 | 1.00[EUR][1000 genomes] |
| rs2717335 | 1.00[EUR][1000 genomes] |
| rs2717336 | 1.00[EUR][1000 genomes] |
| rs2717341 | 1.00[EUR][1000 genomes] |
| rs2717366 | 1.00[EUR][1000 genomes] |
| rs58479714 | 1.00[ASN][1000 genomes] |
| rs59296569 | 1.00[ASN][1000 genomes] |
| rs60603722 | 1.00[ASN][1000 genomes] |
| rs6966480 | 1.00[ASN][1000 genomes] |
| rs6970356 | 1.00[ASN][1000 genomes] |
| rs73314889 | 1.00[ASN][1000 genomes] |
| rs73314898 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73314902 | 1.00[ASN][1000 genomes] |
| rs73316504 | 1.00[ASN][1000 genomes] |
| rs73323560 | 1.00[EUR][1000 genomes] |
| rs886226 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs886228 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531020 | chr7:18971153-19261019 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv887817 | chr7:19021592-19100076 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:19064400-19084800 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 2 | chr7:19064400-19084800 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 3 | chr7:19070400-19082200 | Weak transcription | HSMM | muscle |
| 4 | chr7:19071600-19081400 | Weak transcription | NHDF-Ad | bronchial |
