Variant report

Variant	rs2521727
Chromosome Location	chr7:19085146-19085147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1016981	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1468178	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17140572	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17140626	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2011513	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2097710	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2106723	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2214209	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2263234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2428348	1.00[EUR][1000 genomes]
rs2521724	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2521725	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2521726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2521728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2521730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2521731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2521736	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717326	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717335	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717336	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717341	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717366	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73314898	1.00[EUR][1000 genomes]
rs73316572	1.00[EUR][1000 genomes]
rs73323560	1.00[EUR][1000 genomes]
rs886226	1.00[EUR][1000 genomes]
rs886228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19075600-19089400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19081400-19085200	Strong transcription	NHDF-Ad	bronchial
3	chr7:19082800-19100400	Weak transcription	HSMM	muscle
4	chr7:19083400-19087400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:19084800-19085200	ZNF genes & repeats	Placenta	Placenta
6	chr7:19084800-19086200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:19084800-19086600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:19085000-19085400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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