Variant report

Variant	rs1468178
Chromosome Location	chr7:19099278-19099279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1016981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140572	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17140626	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2011513	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2097710	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2106723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2214209	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2263234	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2428348	1.00[EUR][1000 genomes]
rs2521724	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521725	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2521726	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521727	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521728	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521730	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521731	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521736	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717326	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717335	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2717341	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73314898	1.00[EUR][1000 genomes]
rs73316572	1.00[EUR][1000 genomes]
rs73323560	1.00[EUR][1000 genomes]
rs886226	1.00[EUR][1000 genomes]
rs886228	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1032503	chr7:19092460-19134995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1032126	chr7:19092460-19137228	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2761116	chr7:19092472-19136307	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19082800-19100400	Weak transcription	HSMM	muscle
2	chr7:19086200-19101800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:19086600-19100000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:19091800-19100400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:19094800-19100200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:19097200-19100400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:19097600-19100000	Weak transcription	NHDF-Ad	bronchial
8	chr7:19099200-19099600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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