Variant report

Variant	rs6973844
Chromosome Location	chr7:38947961-38947962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38938879..38942255-chr7:38943779..38948503,4	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10234008	0.84[AMR][1000 genomes]
rs10245301	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10279367	0.86[CEU][hapmap]
rs17680408	0.82[CEU][hapmap]
rs2286078	0.87[CEU][hapmap]
rs3779122	0.87[CEU][hapmap]
rs3779128	0.91[CEU][hapmap]
rs3801128	0.80[AMR][1000 genomes]
rs62444140	0.80[AMR][1000 genomes]
rs6959858	0.80[AMR][1000 genomes]
rs6973641	0.91[CEU][hapmap]
rs73123612	0.80[AMR][1000 genomes]
rs9655397	0.86[CEU][hapmap]
rs9987069	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38889400-38948200	Weak transcription	Gastric	stomach
2	chr7:38908800-38948000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:38911800-38948200	Weak transcription	Aorta	Aorta
4	chr7:38916800-38948200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:38918800-38948000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:38926400-38948000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:38932200-38948000	Weak transcription	Psoas Muscle	Psoas
8	chr7:38932800-38948000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:38933000-38948200	Weak transcription	Spleen	Spleen
10	chr7:38935800-38948000	Weak transcription	Placenta	Placenta
11	chr7:38935800-38948000	Weak transcription	Ovary	ovary
12	chr7:38936200-38948000	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:38936200-38948000	Weak transcription	Thymus	Thymus
14	chr7:38936400-38948000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:38936400-38948000	Weak transcription	Fetal Intestine Large	intestine
16	chr7:38936400-38948000	Weak transcription	Fetal Thymus	thymus
17	chr7:38936800-38948000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:38942000-38948000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:38942000-38948000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:38942200-38948000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr7:38943000-38948000	Weak transcription	Left Ventricle	heart
22	chr7:38943000-38948000	Weak transcription	Lung	lung
23	chr7:38943000-38948000	Weak transcription	Pancreas	Pancrea
24	chr7:38943000-38948200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:38943200-38948000	Weak transcription	HSMMtube	muscle
26	chr7:38943200-38948200	Weak transcription	Esophagus	oesophagus
27	chr7:38943600-38948200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:38944800-38948000	Enhancers	Primary B cells from peripheral blood	blood
29	chr7:38945200-38948000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr7:38946800-38948000	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr7:38946800-38948000	Enhancers	Primary hematopoietic stem cells	blood
32	chr7:38946800-38948000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr7:38946800-38948400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr7:38947000-38948000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr7:38947000-38948000	Weak transcription	Right Ventricle	heart
36	chr7:38947200-38948000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr7:38947200-38948000	Enhancers	Stomach Mucosa	stomach
38	chr7:38947200-38949000	Active TSS	GM12878-XiMat	blood
39	chr7:38947400-38948000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:38947400-38948000	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr7:38947400-38948000	Enhancers	Liver	Liver
42	chr7:38947400-38948000	Flanking Active TSS	K562	blood
43	chr7:38947400-38948400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:38947400-38948400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr7:38947400-38948400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:38947400-38948400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:38947600-38948000	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr7:38947600-38948000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:38947600-38948000	Enhancers	Fetal Brain Male	brain
50	chr7:38947600-38948000	Enhancers	Fetal Heart	heart

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