The 2.0 version of rSNPBase

Variant report

Variant rs17680408
Chromosome Location chr7:38853772-38853773
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:38793400-38861200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr7:38813800-38857400 Weak transcription HSMM muscle
3 chr7:38822400-38855200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr7:38829400-38854600 Weak transcription Left Ventricle heart
5 chr7:38829400-38855200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr7:38829400-38855600 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr7:38829400-38856400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr7:38829400-38864400 Weak transcription Thymus Thymus
9 chr7:38829400-38864600 Weak transcription NHLF lung
10 chr7:38831000-38871200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr7:38831800-38854800 Weak transcription Fetal Stomach stomach
12 chr7:38831800-38856800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr7:38831800-38856800 Weak transcription Pancreas Pancrea
14 chr7:38831800-38857000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr7:38831800-38867800 Weak transcription Fetal Thymus thymus
16 chr7:38832000-38855600 Weak transcription Dnd41 blood
17 chr7:38832000-38857400 Weak transcription Lung lung
18 chr7:38832400-38855200 Weak transcription Fetal Intestine Small intestine
19 chr7:38832800-38857000 Weak transcription Esophagus oesophagus
20 chr7:38833400-38857000 Weak transcription Duodenum Mucosa Duodenum
21 chr7:38833400-38859400 Weak transcription Spleen Spleen
22 chr7:38833600-38857000 Weak transcription Aorta Aorta
23 chr7:38833600-38857200 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr7:38834400-38863400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr7:38835200-38855200 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr7:38835200-38855600 Weak transcription Fetal Intestine Large intestine
27 chr7:38835200-38857000 Weak transcription Fetal Lung lung
28 chr7:38835200-38865200 Weak transcription Rectal Smooth Muscle rectum
29 chr7:38835400-38854000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr7:38835400-38855200 Weak transcription Liver Liver
31 chr7:38835400-38857000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr7:38835600-38856400 Weak transcription Stomach Smooth Muscle stomach
33 chr7:38835600-38857400 Weak transcription Ovary ovary
34 chr7:38835600-38857600 Weak transcription Adipose Nuclei Adipose
35 chr7:38835600-38862200 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr7:38835600-38900800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr7:38835800-38855600 Weak transcription HSMMtube muscle
38 chr7:38835800-38856200 Weak transcription GM12878-XiMat blood
39 chr7:38835800-38856800 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr7:38835800-38858600 Weak transcription Primary T cells fromperipheralblood blood
41 chr7:38836200-38854800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr7:38836200-38856200 Weak transcription Placenta Placenta
43 chr7:38836400-38855400 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr7:38836400-38855600 Weak transcription Primary T cells from cord blood blood
45 chr7:38836400-38855600 Weak transcription Primary hematopoietic stem cells blood
46 chr7:38836400-38855600 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr7:38836400-38857400 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr7:38839800-38856800 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr7:38839800-38871000 Weak transcription HUES64 Cell Line embryonic stem cell
50 chr7:38841000-38858200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015