Variant report

Variant	rs6975344
Chromosome Location	chr7:103623937-103623938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10230806	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10256985	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs10272734	0.86[CHB][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs11984351	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17313716	0.88[CEU][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs35015369	0.96[ASN][1000 genomes]
rs4256534	0.80[ASN][1000 genomes]
rs4270893	0.81[ASN][1000 genomes]
rs4321924	0.95[ASN][1000 genomes]
rs4358742	0.86[CHB][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs4460306	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs6465947	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6950391	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs6950859	0.83[ASN][1000 genomes]
rs6967570	0.83[ASN][1000 genomes]
rs6976337	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs7784722	0.82[ASN][1000 genomes]
rs7809970	0.86[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6975344	PIK3CG	cis	cerebellum	SCAN
rs6975344	PMS2L1	cis	parietal	SCAN
rs6975344	AP1S1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103613800-103627800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:103623200-103624000	Weak transcription	K562	blood
3	chr7:103623200-103625600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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