Variant report

Variant	rs7809970
Chromosome Location	chr7:103601534-103601535
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103599829..103601669-chr7:103601789..103603458,2	K562	blood:
2	chr7:103595750..103598275-chr7:103601030..103605742,5	K562	blood:
3	chr7:103600490..103602295-chr7:103627924..103630124,2	K562	blood:
4	chr7:103595815..103597776-chr7:103600906..103603016,3	K562	blood:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10230806	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10256985	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10272734	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11984351	0.87[ASN][1000 genomes]
rs17313716	0.91[MEX][hapmap];0.81[AMR][1000 genomes]
rs34341126	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35015369	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4256534	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4270893	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4321924	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4358742	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4407801	0.81[CEU][hapmap]
rs4460306	0.88[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4727580	0.96[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4727581	0.96[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs6465947	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6465950	0.86[EUR][1000 genomes]
rs6950391	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6950859	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6967570	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6975344	0.86[CHB][hapmap]
rs6976337	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs722277	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs722278	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7784722	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7809970	PIK3CG	cis	cerebellum	SCAN
rs7809970	AP1S1	cis	cerebellum	SCAN
rs7809970	CUX1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103598200-103602800	Weak transcription	Fetal Heart	heart
2	chr7:103599000-103604200	Weak transcription	K562	blood
3	chr7:103599000-103607800	Weak transcription	HepG2	liver

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