Variant report

Variant	rs4727580
Chromosome Location	chr7:103596176-103596177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103590222..103593239-chr7:103593439..103596929,5	K562	blood:
2	chr7:103594734..103596303-chr7:103597804..103600548,2	K562	blood:
3	chr7:103590222..103593297-chr7:103593360..103596910,6	K562	blood:
4	chr7:103595571..103598379-chr7:103607463..103609037,2	K562	blood:
5	chr7:103595750..103598275-chr7:103601030..103605742,5	K562	blood:
6	chr7:103595815..103597776-chr7:103600906..103603016,3	K562	blood:
7	chr7:103580049..103581812-chr7:103595341..103598301,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10230806	0.88[CEU][hapmap]
rs10256985	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs10272734	0.89[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap]
rs17313716	0.81[TSI][hapmap]
rs34341126	0.83[EUR][1000 genomes]
rs4270893	0.88[CEU][hapmap]
rs4358742	0.89[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap]
rs4407801	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs4460306	0.85[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap]
rs4727581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6465947	0.89[CEU][hapmap]
rs6950391	0.89[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap]
rs6976337	0.92[CEU][hapmap]
rs722277	0.81[CEU][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs722278	0.82[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs7809970	0.96[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4727580	AP1S1	cis	cerebellum	SCAN
rs4727580	CUX1	cis	parietal	SCAN
rs4727580	ATXN7L1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103584800-103596800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:103590600-103597200	Weak transcription	K562	blood
3	chr7:103595000-103596600	Weak transcription	Fetal Heart	heart
4	chr7:103596000-103599000	Strong transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links